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To be specific: it gives an error at every CUDA filter !!!<br>
<br>
<div class="moz-cite-prefix">On 3/18/2016 3:20 PM, Johnson Keiriz
wrote:<br>
</div>
<blockquote cite="mid:56EC5503.7070807@theobjects.com" type="cite">
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
Hello, <br>
I have tried to create a .json file for the <b>
RegularizedConjugateGradientConeBeamReconstructionFilter </b>and
got the below errors while compiling. <br>
<br>
The json file contains:<br>
<br>
{<br>
"name" :
"RegularizedConjugateGradientConeBeamReconstructionFilter",<br>
"template_code_filename" : "RTKImageFilter",<br>
"template_test_filename" : "ImageFilter",<br>
"number_of_inputs" : 2,<br>
"doc" : "",<br>
"output_image_type" : "TImageType",<br>
"pixel_types" : "RealPixelIDTypeList",<br>
"filter_type" :
"rtk::RegularizedConjugateGradientConeBeamReconstructionFilter<InputImageType>",<br>
"include_files" : [<br>
"srtkThreeDCircularProjectionGeometry.h"<br>
],<br>
"members" : [],<br>
"briefdescription" : "Implements regularized conjugate Gradient
cone-beam reconstruction.",<br>
"detaileddescription" : ""<br>
}<br>
<br>
<br>
Error 1 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaBackProjectionImageFilter::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkIterativeConeBeamReconstructionFilter.hxx 77
1 SimpleRTK<br>
Error 2 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaRayCastBackProjectionImageFilter::Pointer' (or there is
no acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkIterativeConeBeamReconstructionFilter.hxx 87
1 SimpleRTK<br>
Error 3 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConstantVolumeSource::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkReconstructionConjugateGradientOperator.hxx
39 1 SimpleRTK<br>
Error 4 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConstantVolumeSource::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkReconstructionConjugateGradientOperator.hxx
40 1 SimpleRTK<br>
Error 5 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaLaplacianImageFilter::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkReconstructionConjugateGradientOperator.hxx
41 1 SimpleRTK<br>
Error 6 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaDisplacedDetectorImageFilter::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkConjugateGradientConeBeamReconstructionFilter.hxx
42 1 SimpleRTK<br>
Error 7 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConstantVolumeSource::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkConjugateGradientConeBeamReconstructionFilter.hxx
43 1 SimpleRTK<br>
Error 8 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConjugateGradientImageFilter_3f::Pointer' (or there is
no acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkConjugateGradientConeBeamReconstructionFilter.hxx
129 1 SimpleRTK<br>
Error 9 error C2678: binary '*' : no operator found which
takes a left-hand operand of type 'float' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkMagnitudeThresholdImageFilter.hxx 59 1
SimpleRTK<br>
Error 10 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaBackProjectionImageFilter::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkIterativeConeBeamReconstructionFilter.hxx 77
1 SimpleRTK<br>
Error 11 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaRayCastBackProjectionImageFilter::Pointer' (or there is
no acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkIterativeConeBeamReconstructionFilter.hxx 87
1 SimpleRTK<br>
Error 12 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConstantVolumeSource::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkReconstructionConjugateGradientOperator.hxx
39 1 SimpleRTK<br>
Error 13 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConstantVolumeSource::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkReconstructionConjugateGradientOperator.hxx
40 1 SimpleRTK<br>
Error 14 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaLaplacianImageFilter::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkReconstructionConjugateGradientOperator.hxx
41 1 SimpleRTK<br>
Error 15 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaDisplacedDetectorImageFilter::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkConjugateGradientConeBeamReconstructionFilter.hxx
42 1 SimpleRTK<br>
Error 16 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConstantVolumeSource::Pointer' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkConjugateGradientConeBeamReconstructionFilter.hxx
43 1 SimpleRTK<br>
Error 17 error C2679: binary '=' : no operator found which
takes a right-hand operand of type
'rtk::CudaConjugateGradientImageFilter_3f::Pointer' (or there is
no acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkConjugateGradientConeBeamReconstructionFilter.hxx
129 1 SimpleRTK<br>
Error 18 error C2678: binary '*' : no operator found which
takes a left-hand operand of type 'float' (or there is no
acceptable conversion)
[C:\RTK\BUILD\SimpleRTK-build\Code\BasicFilters\src\SimpleRTKBasicFilters2.vcxproj]
c:\rtk\code\rtkMagnitudeThresholdImageFilter.hxx 59 1
SimpleRTK<br>
<br>
<br>
Thanks,<br>
Johnson<br>
<br>
<div class="moz-cite-prefix">On 3/18/2016 2:16 PM, Johnson Keiriz
wrote:<br>
</div>
<blockquote cite="mid:56EC4612.3000507@theobjects.com" type="cite">
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
Hello, <br>
I am trying to do the wrapping for the
RegularizedConjugateGradientConeBeamReconstructionFilter, do I
need to wrap all the filters that it uses ?<br>
Is there any guiding document for the wrapping method?<br>
<br>
Regards,<br>
Johnson<br>
<br>
<div class="moz-cite-prefix">On 3/18/2016 9:31 AM, Cyril Mory
wrote:<br>
</div>
<blockquote cite="mid:56EC0335.50109@uclouvain.be" type="cite">
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
Hi again,<br>
<br>
You got the SART filter right. As for the conjugate gradient,
the filter is actually
ConjugateGradientConeBeamReconstructionFilter (for the 3D
non-regularized reconstruction) and
RegularizedConjugateGradientConeBeamReconstructionFilter (its
regularized counterpart). <br>
<br>
The filter you found,
FourDConjugateGradientConeBeamReconstructionFilter, is used
for 4D reconstruction (you need a cardiac or respiratory phase
signal). Its regularized counterpart is
FourDROOSTERConeBeamReconstructionFilter.<br>
<br>
In addition to those, RTK also has
ADMMTotalVariationConeBeamReconstructionFilter and
ADMMWaveletsConeBeamReconstructionFilter, which implement the
Alternating Direction Method of Multiplier algorithm. <br>
<br>
You can find a description of these algorithms in <a
moz-do-not-send="true" class="moz-txt-link-freetext"
href="https://hal.inria.fr/tel-00985728/document"><a class="moz-txt-link-freetext" href="https://hal.inria.fr/tel-00985728/document">https://hal.inria.fr/tel-00985728/document</a></a><br>
<br>
Note that the SART filter has a m_NumberOfProjectionsPerSubset
member. Setting it to 1 (default) gives you SART, setting it
to n with 1 < n < TotalNumberOfProjections gives you
OS-SART, and setting it to n=TotalNumberOfProjections gives
you SIRT.<br>
<br>
That's pretty much all there is in RTK at the moment.<br>
Cyril<br>
<br>
<div class="moz-cite-prefix">On 03/18/2016 02:11 PM, Johnson
Keiriz wrote:<br>
</div>
<blockquote cite="mid:56EBFE6A.2070606@theobjects.com"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
Hello,<br>
Can you please confirm that the following classes are the
ones used for the iterative reconstruction:<br>
1 - SART: SARTConeBeamReconstructionFilter<br>
2- Conjugate gradient:
FourDConjugateGradientConeBeamReconstructionFilter<br>
<br>
Is there a 3D conjugate gradient?<br>
Are these the only classes for iterative reconstruction?<br>
<br>
Thanks,<br>
Johnson<br>
<br>
<div class="moz-cite-prefix">On 3/18/2016 4:12 AM, Cyril
Mory wrote:<br>
</div>
<blockquote cite="mid:56EBB86E.80409@uclouvain.be"
type="cite"> Hi Johnson,<br>
<br>
Regarding the iterative methods:<br>
- In SART, you can use the CUDA forward and back
projectors, but the rest of the calculation is performed
on CPU. We do not use SART a lot, so we have not fully
optimized it. <br>
- Conjugate gradient, on the other hand, is entirely
performed on the GPU. Note that a regularized conjugate
gradient reconstruction filter is also available (with
total variation denoising, wavelets denoising, and
positivity enforcement)<br>
<br>
I hope you will find what you need,<br>
Regards,<br>
Cyril<br>
<br>
<div class="moz-cite-prefix">On 03/17/2016 08:54 PM,
Johnson Keiriz wrote:<br>
</div>
<blockquote cite="mid:002701d18086$c174df10$445e9d30$@com"
type="cite">
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<div class="WordSection1">
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hello,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I
did rebuild and now things are working. I tested
reconstruction with and without the filtering and
there were differences. Though, I am not sure that
filtering have provided a better reconstruction.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I
want to experiment the iterative methods. Can you
please confirm for me which iterative method are
fully implemented in CUDA: is it the conjugate
gradient or SART ?<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I
have noticed that they are not wrapped at all, any
guide on how to introduce new filters?<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Once
I have tested my wrapping, I will submit a github
pull-request. <o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Johnson<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF
1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">
<a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:simon.rit@gmail.com">simon.rit@gmail.com</a>
[<a moz-do-not-send="true"
class="moz-txt-link-freetext"
href="mailto:simon.rit@gmail.com">mailto:simon.rit@gmail.com</a>]
<b>On Behalf Of </b>Simon Rit<br>
<b>Sent:</b> Thursday, March 17, 2016 1:54 PM<br>
<b>To:</b> Johnson Keiriz<br>
<b>Cc:</b> <a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:rtk-users@public.kitware.com">rtk-users@public.kitware.com</a><br>
<b>Subject:</b> Re: [Rtk-users] Python Wrapping<o:p></o:p></span></p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<div>
<div>
<div>
<p class="MsoNormal">Hi,<o:p></o:p></p>
</div>
<p class="MsoNormal">Good! Indeed, many things
are not wrapped. There is a trick regarding
modifications of the wrappings. You need to
either start from scratch the compilation or
delete the file
SimpleRTK-prefix/src/SimpleRTK-stamp/SimpleRTK-configure.
This will trigger a reconfiguration of the
SimpleRTK and, hopefully, account for your
modifications.<o:p></o:p></p>
</div>
<p class="MsoNormal">Don't hesitate to submit a
github pull-request when you have something
working.<o:p></o:p></p>
</div>
<p class="MsoNormal">Simon<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On Thu, Mar 17, 2016 at 4:33
PM, Johnson Keiriz <<a moz-do-not-send="true"
href="mailto:jkeiriz@theobjects.com"
target="_blank">jkeiriz@theobjects.com</a>>
wrote:<o:p></o:p></p>
<div>
<div>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="color:#1F497D">Hello again,</span><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="color:#1F497D">I found out about
the json wrapping files. I added the
wrapping for all the filters, but I
haven’t noticed any effect from setting
the filters !!! </span><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="color:#1F497D">Any hints ?</span><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="color:#1F497D">Regards,</span><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="color:#1F497D">Johnson</span><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="color:#1F497D"> </span><o:p></o:p></p>
<div>
<div style="border:none;border-top:solid
#B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">
Rtk-users [mailto:<a
moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:rtk-users-bounces@public.kitware.com"><a class="moz-txt-link-abbreviated" href="mailto:rtk-users-bounces@public.kitware.com">rtk-users-bounces@public.kitware.com</a></a>]
<b>On Behalf Of </b>Johnson Keiriz<br>
<b>Sent:</b> Thursday, March 17, 2016
9:23 AM<br>
<b>To:</b> <a moz-do-not-send="true"
href="mailto:rtk-users@public.kitware.com" target="_blank">rtk-users@public.kitware.com</a>;
Simon Rit<br>
<b>Subject:</b> [Rtk-users] Python
Wrapping</span><o:p></o:p></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hello,
<o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I
am using the Python wrapped version of
RTK. I have a question regarding the
wrapping:<o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">It
seems that not all functionality is
available, for example: for the <b>CudaFDKConeBeamReconstructionFilter,
</b>I was not able to set the cut
frequency of the any of the filters<o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">(RamLaK,
Cosine, ShepLogan) except for the Hann .
Are the methods not wrapped ?<o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks,<o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Johnson<o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span
style="font-size:10.0pt;color:#1F497D" lang="EN-CA">Johnson Keiriz, PhD<br>
Senior Software Engineer</span></b><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="font-size:7.5pt;color:#1F497D" lang="EN-CA">760 St-Paul W, #101<br>
Montreal, QC<br>
Canada H3C 1M4<br>
tel: <a
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target="_blank">(514)
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<pre wrap="">_______________________________________________
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Canada H3C 1M4<br>
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ext 217</span></p>
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<pre wrap="">_______________________________________________
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Senior Software Engineer</span></b></p>
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Canada H3C 1M4<br>
tel: (514) 843-3861<br>
ext 217</span></p>
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<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Rtk-users mailing list
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<a class="moz-txt-link-freetext" href="http://public.kitware.com/mailman/listinfo/rtk-users">http://public.kitware.com/mailman/listinfo/rtk-users</a>
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Canada H3C 1M4<br>
tel: (514) 843-3861<br>
ext 217</span></p>
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