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<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">Hi Cyril,<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">That’s great. Thank you very much.<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">Best<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">Uffe<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
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<p class="MsoNormal"><b><font size="2" color="black" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma;color:windowtext;font-weight:bold">Fra:</span></font></b><font size="2" color="black" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma;
color:windowtext">
Cyril Mory [mailto:cyril.mory@creatis.insa-lyon.fr] <br>
<b><span style="font-weight:bold">Sendt:</span></b> 3. juni 2014 17:30<br>
<b><span style="font-weight:bold">Til:</span></b> Uffe Bernchou; 'Simon Rit'<br>
<b><span style="font-weight:bold">Cc:</span></b> rtk-users@openrtk.org<br>
<b><span style="font-weight:bold">Emne:</span></b> Re: [Rtk-users] Release of RTK v1.0.0</span></font><font color="black"><span style="color:windowtext"><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">Dear Uffe,<br>
<br>
The method is described and compared to others in this PhD thesis :<br>
<a href="http://tel.archives-ouvertes.fr/docs/00/98/57/28/PDF/TH2014_Mory_Cyril.pdf">http://tel.archives-ouvertes.fr/docs/00/98/57/28/PDF/TH2014_Mory_Cyril.pdf</a><br>
That's for the pdf. You can access the description here : <br>
<a href="http://tel.archives-ouvertes.fr/tel-00985728">http://tel.archives-ouvertes.fr/tel-00985728</a><br>
<br>
Your comments/questions are welcome.<br>
<br>
Best regards,<br>
Cyril<o:p></o:p></span></font></p>
<div>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">Le 03/06/2014 14:36, Uffe Bernchou a écrit :<o:p></o:p></span></font></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt" cite="mid:C1D121D59E5C7040947FEC5D6B42942C10316FF3@SRVODEEXCH04.Rsyd.net" type="cite">
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy">Dear Simon,<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span style="font-size:
10.0pt;font-family:Arial;color:navy"><u1:p> </u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">Do you have a reference publication for the new iterative 3D reconstruction with 3D TV regularization implemented in the v.1.00
release of RTK?<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy"><u1:p> </u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">Best regards,<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy">Uffe<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy"><u1:p> </u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">------------------------------<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">Uffe Bernchou, Ph.D.<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">Postdoc<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt"> <u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">Laboratory of Radiation Physics,
<st1:place w:st="on"><st1:PlaceName w:st="on">Odense</st1:PlaceName> <st1:PlaceType w:st="on">
University</st1:PlaceType> <st1:PlaceType w:st="on">Hospital<u1:p></u1:p></st1:PlaceType></st1:place></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">Institute of Clinical Research,
<st1:place w:st="on"><st1:PlaceType w:st="on">University</st1:PlaceType> of <st1:PlaceName w:st="on">
Southern Denmark<u1:p></u1:p></st1:PlaceName></st1:place></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">Email:
</span></font><font size="2"><span style="font-size:10.0pt"><a href="mailto:uffe.bernchou@rsyd.dk" title="mailto:uffe.bernchou@rsyd.dk" moz-do-not-send="true"><span lang="EN-GB">uffe.bernchou@rsyd.dk</span></a></span></font><o:p></o:p></p>
<u1:p></u1:p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span lang="EN-GB" style="font-size:10.0pt">Phone: +45 29796478<u1:p></u1:p></span></font><o:p></o:p></p>
<p class="MsoNormal"><font size="2" color="black" face="Times New Roman"><span style="font-size:10.0pt">Sdr. Boulevard 29, Indgang 97, 5000 Odense C</span></font><o:p></o:p></p>
<u1:p></u1:p>
<p class="MsoNormal"><font size="2" color="navy" face="Arial"><span lang="EN-GB" style="font-size:10.0pt;font-family:Arial;color:navy"><u1:p> </u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><b><font size="2" color="black" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma;font-weight:bold">Fra:</span></font></b><font size="2" face="Tahoma"><span style="font-size:10.0pt;font-family:Tahoma"> Rtk-users [<a href="mailto:rtk-users-bounces@openrtk.org">mailto:rtk-users-bounces@openrtk.org</a>]
<b><span style="font-weight:bold">På vegne af </span></b>Simon Rit<br>
<b><span style="font-weight:bold">Sendt:</span></b> 28. april 2014 16:33<br>
<b><span style="font-weight:bold">Til:</span></b> <a href="mailto:rtk-users@openrtk.org">
rtk-users@openrtk.org</a><br>
<b><span style="font-weight:bold">Emne:</span></b> [Rtk-users] Release of RTK v1.0.0</span></font><u1:p></u1:p><o:p></o:p></p>
</div>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><u1:p> </u1:p><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times
"><span style="font-size:12.0pt;font-family:"Times\000D\000A"">Dear RTK users,<u1:p></u1:p></span></font><o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><font size="3" color="black" face="Times
"><span style="font-size:12.0pt;font-family:"Times\000D\000A"">It is my pleasure to announce the release of RTK v1.0.0. As announced previously on the mailing list, the new release is no more compatible
with ITK 3.20, this release is compatible with ITK v4.2.0 and more recent releases. We are still actively developing RTK with both new filtered backprojection and iterative algorithms so I still encourage the use of git to be up-to-date. As usual, please report
any issue that you encounter with RTK, we are happy to help when we can. Note the l<a href="http://www.openrtk.org/RTK/project/publications.php" target="_blank" moz-do-not-send="true">ist of publications using RTK</a> on the main site: please send me the DOI
of your articles if you want them to appear there. We have also added a webpage with
<a href="http://www.openrtk.org/RTK/project/casestudies.html" target="_blank" moz-do-not-send="true">
use cases</a>.<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times
"><span style="font-size:12.0pt;font-family:"Times\000D\000A"">I'm looking forward to your feedback. Regards,<u1:p></u1:p></span></font><o:p></o:p></p>
</div>
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<p class="MsoNormal"><font size="3" color="black" face="Times
"><span style="font-size:12.0pt;font-family:"Times\000D\000A"">Simon<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times
"><span style="font-size:12.0pt;font-family:"Times\000D\000A""><br>
Release notes:<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times
"><span style="font-size:12.0pt;font-family:"Times\000D\000A"">- introduction of the itk::CudaImage object that better handles the memory transfers between the CPU and the GPU<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New
"><span style="font-size:12.0pt;font-family:"Times New\000D\000A"">- pre-processing for projection images: binning, median filter, lookup-table filter<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New
"><span style="font-size:12.0pt;font-family:"Times New\000D\000A"">- filtered backprojection with offset center-of-rotation based on [Gullberg et al, TMI, 1986]<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New
"><span style="font-size:12.0pt;font-family:"Times New\000D\000A"">- improved Joseph forward projector and implementation of its exact adjoint<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New
"><span style="font-size:12.0pt;font-family:"Times New\000D\000A"">- improved SART reconstruction [Andersen, Ultrason Imaging, 1984]<br>
- new iterative 3D reconstruction using conjugate gradient optimization<u1:p></u1:p></span></font><o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">- new iterative 3D reconstruction with 3D TV regularization using the Alternating Direction Method of Multipliers combined with
the Augmented Lagrangian method<u1:p></u1:p><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">Documentation:<u1:p></u1:p><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">- improved Doxygen with dot graphs to describe mini-pipelines, e.g., in the
<a href="http://www.openrtk.org/Doxygen/classrtk_1_1SARTConeBeamReconstructionFilter.html" target="_blank" moz-do-not-send="true">
SART page</a><u1:p></u1:p><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">- updated
<a href="http://www.openrtk.org/RTK/project/consortium.html" target="_blank" moz-do-not-send="true">
consortium</a> and <a href="http://www.openrtk.org/RTK/resources/alternatives.html" target="_blank" moz-do-not-send="true">
alternative platforms</a> pages<u1:p></u1:p><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt">- updated wiki<u1:p></u1:p><o:p></o:p></span></font></p>
</div>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><u1:p> </u1:p><o:p></o:p></span></font></p>
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<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">_______________________________________________<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Rtk-users mailing list<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt"><a href="mailto:Rtk-users@openrtk.org">Rtk-users@openrtk.org</a><o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt"><a href="http://public.kitware.com/cgi-bin/mailman/listinfo/rtk-users">http://public.kitware.com/cgi-bin/mailman/listinfo/rtk-users</a><o:p></o:p></span></font></pre>
</blockquote>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><br>
<br>
<o:p></o:p></span></font></p>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">-- <o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Cyril Mory, Post-doc<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">CREATIS<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Leon Berard cancer treatment center<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">28 rue Laënnec<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">69373 Lyon cedex 08 FRANCE<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt"><o:p> </o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Mobile: +33 6 69 46 73 79<o:p></o:p></span></font></pre>
<p class="MsoNormal" style="margin-bottom:12.0pt"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><o:p> </o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><a href="http://www.avast.com/"><span style="text-decoration:none"><img border="0" width="90" height="33" id="_x0000_i1027" src="http://static.avast.com/emails/avast-mail-stamp.png"></span></a><o:p></o:p></span></font></p>
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<p><font size="3" color="#3d4d5a" face="Calibri"><span style="font-size:12.0pt;
font-family:Calibri;color:#3D4D5A">Ce courrier électronique ne contient aucun virus ou logiciel malveillant parce que
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