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Dear Uffe,<br>
<br>
The method is described and compared to others in this PhD thesis :<br>
<a class="moz-txt-link-freetext" href="http://tel.archives-ouvertes.fr/docs/00/98/57/28/PDF/TH2014_Mory_Cyril.pdf">http://tel.archives-ouvertes.fr/docs/00/98/57/28/PDF/TH2014_Mory_Cyril.pdf</a><br>
That's for the pdf. You can access the description here : <br>
<a class="moz-txt-link-freetext" href="http://tel.archives-ouvertes.fr/tel-00985728">http://tel.archives-ouvertes.fr/tel-00985728</a><br>
<br>
Your comments/questions are welcome.<br>
<br>
Best regards,<br>
Cyril<br>
<div class="moz-cite-prefix">Le 03/06/2014 14:36, Uffe Bernchou a
écrit :<br>
</div>
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<div class="Section1">
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:
10.0pt;font-family:Arial;color:navy">Dear Simon,<o:p></o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:
10.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:Arial;color:navy"
lang="EN-GB">Do you have a reference publication for the
new iterative 3D reconstruction with 3D TV regularization
implemented in the v.1.00 release of RTK?<o:p></o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:Arial;color:navy"
lang="EN-GB"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:Arial;color:navy"
lang="EN-GB">Best regards,<o:p></o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:Arial;color:navy"
lang="EN-GB">Uffe<o:p></o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:Arial;color:navy"
lang="EN-GB"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">------------------------------<o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">Uffe Bernchou, Ph.D.<o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">Postdoc<o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB"> <o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">Laboratory of
Radiation Physics, Odense University Hospital<o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">Institute of
Clinical Research, University of Southern Denmark<o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">Email:
</span></font><font size="2"><span style="font-size:10.0pt"><a
moz-do-not-send="true"
href="mailto:uffe.bernchou@rsyd.dk"
title="mailto:uffe.bernchou@rsyd.dk"><span lang="EN-GB">uffe.bernchou@rsyd.dk</span></a></span></font><font
size="2"><span style="font-size:10.0pt" lang="EN-GB"><o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:10.0pt" lang="EN-GB">Phone: +45 29796478<o:p></o:p></span></font></p>
<p class="MsoNormal"><font face="Times New Roman" size="2"><span
style="font-size:
10.0pt">Sdr. Boulevard 29, Indgang 97, 5000 Odense C</span></font><font
color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:
Arial;color:navy" lang="EN-GB"><o:p></o:p></span></font></p>
<p class="MsoNormal"><font color="navy" face="Arial" size="2"><span
style="font-size:10.0pt;font-family:Arial;color:navy"
lang="EN-GB"><o:p> </o:p></span></font></p>
<div>
<div class="MsoNormal" style="text-align:center"
align="center"><font face="Times New Roman" size="3"><span
style="font-size:12.0pt">
<hr tabindex="-1" size="2" width="100%" align="center">
</span></font></div>
<p class="MsoNormal"><b><font face="Tahoma" size="2"><span
style="font-size:10.0pt;
font-family:Tahoma;font-weight:bold">Fra:</span></font></b><font
face="Tahoma" size="2"><span
style="font-size:10.0pt;font-family:Tahoma"> Rtk-users
[<a class="moz-txt-link-freetext" href="mailto:rtk-users-bounces@openrtk.org">mailto:rtk-users-bounces@openrtk.org</a>]
<b><span style="font-weight:bold">På vegne af </span></b>Simon
Rit<br>
<b><span style="font-weight:bold">Sendt:</span></b> 28.
april 2014 16:33<br>
<b><span style="font-weight:bold">Til:</span></b>
<a class="moz-txt-link-abbreviated" href="mailto:rtk-users@openrtk.org">rtk-users@openrtk.org</a><br>
<b><span style="font-weight:bold">Emne:</span></b>
[Rtk-users] Release of RTK v1.0.0</span></font><o:p></o:p></p>
</div>
<p class="MsoNormal"><font face="Times New Roman" size="3"><span
style="font-size:
12.0pt"><o:p> </o:p></span></font></p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<p class="MsoNormal"><font face="Times
New Roman" size="3"><span
style="font-size:
12.0pt">Dear RTK users,<o:p></o:p></span></font></p>
</div>
<div>
<p class="MsoNormal"><font face="Times
New Roman" size="3"><span
style="font-size:
12.0pt">It is my pleasure to
announce the release of RTK
v1.0.0. As announced previously
on the mailing list, the new
release is no more compatible
with ITK 3.20, this release is
compatible with ITK v4.2.0 and
more recent releases. We are
still actively developing RTK
with both new filtered
backprojection and iterative
algorithms so I still encourage
the use of git to be up-to-date.
As usual, please report any
issue that you encounter with
RTK, we are happy to help when
we can. Note the l<a
moz-do-not-send="true"
href="http://www.openrtk.org/RTK/project/publications.php"
target="_blank">ist of
publications using RTK</a> on
the main site: please send me
the DOI of your articles if you
want them to appear there. We
have also added a webpage with <a
moz-do-not-send="true"
href="http://www.openrtk.org/RTK/project/casestudies.html"
target="_blank">
use cases</a>.<o:p></o:p></span></font></p>
</div>
<div>
<p class="MsoNormal"><font face="Times
New Roman" size="3"><span
style="font-size:
12.0pt">I'm looking forward to
your feedback. Regards,<o:p></o:p></span></font></p>
</div>
<div>
<p class="MsoNormal"><font face="Times
New Roman" size="3"><span
style="font-size:
12.0pt">Simon<o:p></o:p></span></font></p>
</div>
<div>
<p class="MsoNormal"><font face="Times
New Roman" size="3"><span
style="font-size:
12.0pt"><br>
Release notes:<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times
New Roman" size="3"><span
style="font-size:
12.0pt">- introduction of the
itk::CudaImage object that better
handles the memory transfers
between the CPU and the GPU<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New
Roman" size="3"><span
style="font-size:
12.0pt">- pre-processing for
projection images: binning, median
filter, lookup-table filter<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New
Roman" size="3"><span style="font-size:
12.0pt">- filtered backprojection with
offset center-of-rotation based on
[Gullberg et al, TMI, 1986]<o:p></o:p></span></font></p>
</div>
<div>
<p class="MsoNormal"><font face="Times New
Roman" size="3"><span style="font-size:
12.0pt">- improved Joseph forward
projector and implementation of its
exact adjoint<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New
Roman" size="3"><span style="font-size:
12.0pt">- improved SART reconstruction
[Andersen, Ultrason Imaging, 1984]<br>
- new iterative 3D reconstruction using
conjugate gradient optimization<o:p></o:p></span></font></p>
</div>
</div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><font
face="Times New Roman" size="3"><span
style="font-size:12.0pt">- new iterative 3D
reconstruction with 3D TV regularization
using the Alternating Direction Method of
Multipliers combined with the Augmented
Lagrangian method<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New Roman"
size="3"><span style="font-size:
12.0pt">Documentation:<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New Roman"
size="3"><span style="font-size:
12.0pt">- improved Doxygen with dot graphs to
describe mini-pipelines, e.g., in the
<a moz-do-not-send="true"
href="http://www.openrtk.org/Doxygen/classrtk_1_1SARTConeBeamReconstructionFilter.html"
target="_blank">
SART page</a><o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New Roman"
size="3"><span style="font-size:
12.0pt">- updated
<a moz-do-not-send="true"
href="http://www.openrtk.org/RTK/project/consortium.html"
target="_blank">consortium</a> and
<a moz-do-not-send="true"
href="http://www.openrtk.org/RTK/resources/alternatives.html"
target="_blank">
alternative platforms</a> pages<o:p></o:p></span></font></p>
</div>
<p class="MsoNormal"><font face="Times New Roman" size="3"><span
style="font-size:
12.0pt">- updated wiki<o:p></o:p></span></font></p>
</div>
</div>
<p class="MsoNormal"><font face="Times New Roman" size="3"><span
style="font-size:
12.0pt"><o:p> </o:p></span></font></p>
</div>
</div>
<br>
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<br>
<pre wrap="">_______________________________________________
Rtk-users mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Rtk-users@openrtk.org">Rtk-users@openrtk.org</a>
<a class="moz-txt-link-freetext" href="http://public.kitware.com/cgi-bin/mailman/listinfo/rtk-users">http://public.kitware.com/cgi-bin/mailman/listinfo/rtk-users</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Cyril Mory, Post-doc
CREATIS
Leon Berard cancer treatment center
28 rue Laënnec
69373 Lyon cedex 08 FRANCE
Mobile: +33 6 69 46 73 79</pre>
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