<div dir="ltr">Can replicate the problem, thanks.<div><br></div><div>I don't see any suspicious changes in the ThirdParty/xdmf2 or vtkIOXdmf2 directories that might cause this.</div><div><br></div><div>Trying with the newer Xdmf3 path now.</div><div><br></div><div>Mind filing a bug report?</div><div><br></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature">David E DeMarle<br>Kitware, Inc.<br>R&D Engineer<br>21 Corporate Drive<br>Clifton Park, NY 12065-8662<br>Phone: 518-881-4909</div></div>
<br><div class="gmail_quote">On Tue, Jul 12, 2016 at 9:07 AM, Sonja Habbinga <span dir="ltr"><<a href="mailto:s.habbinga@fz-juelich.de" target="_blank">s.habbinga@fz-juelich.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hello,<br>
<br>
since Version 5, I have several problems using the xdmf reader.<br>
Unlike ParaView4.4.0, which is able to read it withou any problems,<br>
ParaView 5.1.0 and 5.0.1 fail to read the following xdmf file:<br>
(Please find the complete xdmf file here:<br>
<a href="https://fz-juelich.sciebo.de/index.php/s/f6VicXjvJz64q3l" rel="noreferrer" target="_blank">https://fz-juelich.sciebo.de/index.php/s/f6VicXjvJz64q3l</a><br>
and the binary file here:<br>
<a href="https://fz-juelich.sciebo.de/index.php/s/XKcfR9kDKW9Nmct" rel="noreferrer" target="_blank">https://fz-juelich.sciebo.de/index.php/s/XKcfR9kDKW9Nmct</a> )<br>
<br>
Can anyone reproduce the error? Has the xdmf reader changed sice 4.4.0?<br>
<br>
thanks for your help,<br>
Sonja<br>
<br>
#############################################################################################<br>
<?xml version="1.0" ?><br>
<!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []><br>
<Xdmf xmlns:xi="<a href="http://www.w3.org/2001/XInclude" rel="noreferrer" target="_blank">http://www.w3.org/2001/XInclude</a>" Version="2.0"><br>
<Domain><br>
<Grid Name="timeslice 784" GridType="Uniform"><br>
<Topology name="T00000" TopologyType="3DCoRectMesh"<br>
Dimensions=" 1000 400 1"><br>
</Topology><br>
<Geometry name="G00000" Type="ORIGIN_DXDYDZ"><br>
<!-- Origin [um] --><br>
<DataItem Format="XML" Dimensions="3"><br>
0.00000000E+00 0.00000000E+00 0.19949875E+02<br>
</DataItem><br>
<!-- DzDyDx [um] --><br>
<DataItem Format="XML" Dimensions="3"><br>
0.50050050E-01 0.10025063E+00 0.10025063E+00<br>
</DataItem><br>
</Geometry><br>
<!-- Time of timeslice [fs] --><br>
<Time TimeType="Single" Value=" 0.93397947E+02"/><br>
<br>
<!-- Particle densities per particle species [units] --><br>
<Attribute Name="Charge density - electrons" Center="Node"><br>
<DataItem Format="Binary" Seek=" 0" DataType="Float"<br>
Precision="4" Endian="Little"<br>
Dimensions=" 1000 400 1"><br>
pfield00784<br>
</DataItem><br>
</Attribute><br>
<Attribute Name="Charge density - protons" Center="Node"><br>
<DataItem Format="Binary" Seek=" 1600000" DataType="Float"<br>
Precision="4" Endian="Little"<br>
Dimensions=" 1000 400 1"><br>
pfield00784<br>
</DataItem><br>
</Attribute><br>
<br>
...<br>
#############################################################################################<br>
the error message looks like this:<br>
<br>
Alloc :: Resource temporarily unavailable<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx,<br>
line 1208<br>
vtkXdmfReader (0x3c794c0): Failed to read attribute data<br>
<br>
<br>
Alloc :: Resource temporarily unavailable<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx,<br>
line 1208<br>
vtkXdmfReader (0x3c794c0): Failed to read attribute data<br>
<br>
<br>
Alloc :: Resource temporarily unavailable<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/IO/Xdmf2/vtkXdmfHeavyData.cxx,<br>
line 1208<br>
vtkXdmfReader (0x3c794c0): Failed to read attribute data<br>
<br>
....<br>
<br>
Alloc :: No such file or directory<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 551 (Memory Object Array has no data storage)<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 905 (Can't Read Temp Dataset)<br>
Alloc :: No such file or directory<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 551 (Memory Object Array has no data storage)<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 905 (Can't Read Temp Dataset)<br>
Alloc :: No such file or directory<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 551 (Memory Object Array has no data storage)<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 905 (Can't Read Temp Dataset)<br>
Alloc :: Success<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 551 (Memory Object Array has no data storage)<br>
XDMF Error in<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfHDF.cxx<br>
line 905 (Can't Read Temp Dataset)<br>
Alloc :: Success<br>
<br>
...<br>
<br>
Generic Warning: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Rendering/Volume/vtkVolumeTextureMapper3D.cxx,<br>
line 682<br>
vtkVolumeTextureMapper3D::vtkVolumeTextureMapper3D was deprecated for<br>
VTK 7.0 and will be removed in a future version.<br>
<br>
<br>
Generic Warning: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Rendering/VolumeOpenGL/vtkOpenGLVolumeTextureMapper3D.cxx,<br>
line 57<br>
vtkOpenGLVolumeTextureMapper3D::vtkOpenGLVolumeTextureMapper3D was<br>
deprecated for VTK 7.0 and will be removed in a future version.<br>
<br>
<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,<br>
line 153<br>
vtkFloatArray (0x5490c60): Source array too small, requested tuple at<br>
index 0, but there are only 0 tuples in the array.<br>
<br>
<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,<br>
line 153<br>
vtkFloatArray (0x5490e60): Source array too small, requested tuple at<br>
index 0, but there are only 0 tuples in the array.<br>
<br>
<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,<br>
line 153<br>
vtkFloatArray (0x5491200): Source array too small, requested tuple at<br>
index 0, but there are only 0 tuples in the array.<br>
<br>
<br>
ERROR: In<br>
/dev/shm/domini/ParaView/5.1.0/ipsmpi-2016a/ParaView-v5.1.0/VTK/Common/Core/vtkAOSDataArrayTemplate.txx,<br>
line 153<br>
vtkFloatArray (0x54915a0): Source array too small, requested tuple at<br>
index 0, but there are only 0 tuples in the array.<br>
<br>
<br>
...<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
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</blockquote></div><br></div>