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</o:shapelayout></xml><![endif]--></head><body lang=FR link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hi Andy,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I’m using elsA, a CFD package developed by ONERA in France. I was given a few links by the project manager if you want more information about the software:<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>• An Overview of the Multi-Purpose elsA Flow Solver (http://www.aerospacelab-journal.org/sites/www.aerospacelab-journal.org/files/AL2-10.pdf)<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>• Advanced Aerodynamic Applications with the elsA Software (http://www.aerospacelab-journal.org/sites/www.aerospacelab-journal.org/files/AL2-12.pdf)<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>• The Onera elsA CFD software : input from research and feedback from industry - L. Cambier, S. Heib, S. Plot - Mechanics & Industry, 2013<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>elsA is written in C++ (plus some Fortran routines) but possesses a user interface in Python. I’m using a mechanism in the code that calls a Python script when the internal finish state machine changes state (e.g.: at each increment, before the computation, at the end, …).<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hope that answers your question. Let me know if you want more information ;).<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Yohann<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal style='margin-left:35.4pt'><b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Andy Bauer [mailto:andy.bauer@kitware.com] <br><b>Sent:</b> Wednesday, March 09, 2016 4:41 PM<br><b>To:</b> VAUTRIN Yohann (SAFRAN)<br><b>Cc:</b> paraview@paraview.org<br><b>Subject:</b> Re: [Paraview] [Catalyst] Setting the MPI Comm in Python<o:p></o:p></span></p><p class=MsoNormal style='margin-left:35.4pt'><span lang=EN-US><o:p> </o:p></span></p><div><div><div><div><p class=MsoNormal style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:12.0pt;margin-left:35.4pt'>Hi Yohann,<o:p></o:p></p></div><p class=MsoNormal style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:12.0pt;margin-left:35.4pt'>Glad to hear that you were able to get it working! By the way, what simulation code are you instrumenting to use Catalyst if you don't mind saying? I'd be interested to know how it works for you.<o:p></o:p></p></div><p class=MsoNormal style='margin-left:35.4pt'>Best,<o:p></o:p></p></div><p class=MsoNormal style='margin-left:35.4pt'>Andy<o:p></o:p></p></div><div><p class=MsoNormal style='margin-left:35.4pt'><o:p> </o:p></p><div><p class=MsoNormal style='margin-left:35.4pt'>On Wed, Mar 9, 2016 at 5:34 AM, VAUTRIN Yohann (SAFRAN) <<a href="mailto:yohann.vautrin@safran.fr" target="_blank">yohann.vautrin@safran.fr</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hi Andy,</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Thank you for your feedback, it helped me solve my problem.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>If anyone is having a similar problem, what I ended up doing is:</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>import mpi4py.MPI as MPI</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>import vtk</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>comm = MPI.COMM_WORLD</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>rank = comm.Get_rank()</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>size = comm.Get_size()</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>in_subcomm = [0,3,6,9] # list of ranks to include in the VTK communicator</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>subcomm = comm.Split(1 if rank in in_subcomm else 0,rank)</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>#--- In another part of the program called only by the procs in in_subcomm</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>vtkComm = vtk.vtkMPI4PyCommunicator.ConvertToVTK(subcomm)</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>vtkCont = vtk.vtkMPIController()</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>vtkCont.SetCommunicator(vtkComm)</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><i><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>vtk.vtkMPIController.SetGlobalController(vtkCont)</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Due to the way my application works, I had to split the communicator myself, i.e. without using CreateSubController() or PartitionController() because vtk is loaded only by some procs and not every single one (a Mpi_Comm_split operation would therefore be impossible to do).</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>--</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Yohann</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:35.4pt'><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Andy Bauer [mailto:<a href="mailto:andy.bauer@kitware.com" target="_blank">andy.bauer@kitware.com</a>] <br><b>Sent:</b> Sunday, March 06, 2016 12:55 PM<br><b>To:</b> VAUTRIN Yohann (SAFRAN)<br><b>Cc:</b> <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a><br><b>Subject:</b> Re: [Paraview] [Catalyst] Setting the MPI Comm in Python</span><o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US> </span><o:p></o:p></p><div><div><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:12.0pt;margin-left:70.8pt'>Hi,<o:p></o:p></p></div><p class=MsoNormal style='mso-margin-top-alt:auto;margin-bottom:12.0pt;margin-left:70.8pt'>Can you use a different controller that has the same MPI processes assigned to it? If that works for you, you should be able to just create a vtkMPIController and use either CreateSubController() or PartitionController() to create one similar to what you want. Note that you may need to create two vtkMPIControllers, one that corresponds to MPI_COMM_WORLD and one for your partitioning. After you've done that you can use the vtkMPIController::SetGlobalController() to have VTK and ParaView use that for interprocess communication.<o:p></o:p></p></div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'>Best,<o:p></o:p></p></div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'>Andy<o:p></o:p></p></div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'> <o:p></o:p></p><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'>On Fri, Feb 26, 2016 at 10:09 AM, VAUTRIN Yohann (SAFRAN) <<a href="mailto:yohann.vautrin@safran.fr" target="_blank">yohann.vautrin@safran.fr</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>Hi,</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>I’m working on a Catalyst adaptor written in Python for one of the CFD codes I use at work and I’m having trouble setting the MPI communicator I want the vtkCPProcessor object to use (in order to use a subset of MPI_COMM_WORLD). The MPI communicator I create is a mpi4py.MPI_Comm object, which I convert to a vtkMPICommunicator object using vtk.vtkMPI4PyCommunicator.ConvertToVTK. However vtk.vtkPVCatalystPython.vtkCPProcessor.Initialize is expecting a vtkMPICommunicatorOpaqueComm object and there does not seem to be a way for me to create such an object from the Python interface. Am I missing something here or is something not wrapped correctly or wrong?</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>For the moment I use mpi4py.MPI.COMM_WORLD to test everything. The following minimal example replicates my problem:</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><i><span lang=EN-US>import mpi4py.MPI</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><i><span lang=EN-US>import vtk</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><i><span lang=EN-US>comm = mpi4py.MPI.COMM_WORLD</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><i><span lang=EN-US>coprocessor = vtk.vtkPVCatalystPython.vtkCPProcessor()</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><i><span lang=EN-US>coprocessor.Initialize(vtk.vtkMPI4PyCommunicator.ConvertToVTK(comm))</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>The last line fails with this message:</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><i><span lang=EN-US>TypeError: Initialize argument 1: method requires a vtkMPICommunicatorOpaqueComm, a vtkMPICommunicator was provided.</span></i><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>I hope I post on the right mailing list as this could actually be a problem in VTK.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>Thank you for your help.</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US> </span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>Best,</span><o:p></o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:70.8pt'><span lang=EN-US>Yohann V.</span><o:p></o:p></p></div><p style='margin-left:70.8pt'>#<br>" Ce courriel et les documents qui lui sont joints peuvent contenir des informations confidentielles, être soumis aux règlementations relatives au contrôle des exportations ou ayant un caractère privé. 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