<div dir="ltr">David,<div>Thanks for your investigation. I will be able to try this tomorrow. The original issue was with Paraview 4.3.1. We recently built the latest master, so I will be able to confirm whether it was fixed in between.</div><div>Best,</div><div>Ryan</div><div><br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 10:23 AM, David Lonie <span dir="ltr"><<a href="mailto:david.lonie@kitware.com" target="_blank">david.lonie@kitware.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Ryan,<div><br></div><div>I'm looking into this issue.</div><div><br></div><div>I download the sample data you provided, and the state file loads and renders fine for me with the current (as of this morning) master branch of ParaView. What version of ParaView are you using? Can you test the latest master branch? It appears that whatever the bug was, it has been fixed.</div><div><br></div><div>Dave</div></div><div class="gmail_extra"><br><div class="gmail_quote"><span class="">On Wed, Oct 21, 2015 at 9:50 AM, Aashish Chaudhary <span dir="ltr"><<a href="mailto:aashish.chaudhary@kitware.com" target="_blank">aashish.chaudhary@kitware.com</a>></span> wrote:<br></span><div><div class="h5"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Ryan, </div><div><br></div><div>would it be possible for you to share a sample dataset? The NetCDF reader has fails to read data in certain corner cases but without having the data to reproduce the issue it is kind of little tricky to get to the problem. <br></div><div><br></div><div>- Aashish</div></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div>On Wed, Oct 21, 2015 at 9:44 AM, Ryan Abernathey <span dir="ltr"><<a href="mailto:ryan.abernathey@gmail.com" target="_blank">ryan.abernathey@gmail.com</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div><div dir="ltr">Does anyone have any feedback on this issue?<div><br></div><div>I have no idea how to debug or continue. I will have to abandon paraview for my project unless I can get some help somehow.</div><div><br></div><div>Thanks,</div><div><br></div><div><div>Ryan Abernathey</div><div>Assistant Professor</div><div>Columbia University, Department of Earth & Environmental Sciences</div><div>Lamont-Doherty Earth Observatory, Division of Ocean & Climate Physics</div><div>205 C Oceanography</div><div>61 Route 9W - PO Box 1000</div><div>Palisades, NY 10964-8000</div><div><a href="http://rabernat.github.io" target="_blank">http://rabernat.github.io</a></div><div><a href="mailto:rpa@ldeo.columbia.edu" target="_blank">rpa@ldeo.columbia.edu</a></div></div><div><br></div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Oct 19, 2015 at 4:59 PM, Ryan Abernathey <span dir="ltr"><<a href="mailto:ryan.abernathey@gmail.com" target="_blank">ryan.abernathey@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div><div><div><div><div>Hello,<br><br></div>I am extremely frustrated and stuck on this problem. Any advice would be appreciated.<br><br></div>I am working with a dataset of 2400 sequentially numbered netCDF files (generic & CF conventions).<br><br></div>In a fresh pipeline, Paraview is able to recognizes these files as a single source and load them correctly. I then create a standard pipeline involving various filters (contour, etc., nothing funny) and save a state file.<br><br></div>When I attempt to load the state file, I get the following segmentation fault. Further down you can see a ncdump of the offending file.<br><br></div><div>Would appreciate any advice on how to debug / overcome this issue. Is it a bug? It sure feels like one...<br></div><div><br></div></div>Best,<br></div>Ryan Abernathey<br><div><div><div><div><div><div><div><div><div><br><br>ERROR: In /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/IO/NetCDF/vtkNetCDFReader.cxx, line 822<br>vtkNetCDFCFReader (0x55c0620): netCDF Error: NetCDF: Index exceeds dimension bound<br><br><br>ERROR: In /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784<br>vtkPVCompositeDataPipeline (0x5be23d0): Algorithm vtkFileSeriesReader(0x4c0c3e0) returned failure for request: vtkInformation (0x8141700)<br> Debug: Off<br> Modified Time: 999905<br> Reference Count: 1<br> Registered Events: (none)<br> Request: REQUEST_DATA<br> FORWARD_DIRECTION: 0<br> FROM_OUTPUT_PORT: 0<br> ALGORITHM_AFTER_FORWARD: 1<br><br><br><br><br>ERROR: In /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784<br>vtkCompositeDataPipeline (0x744fde0): Algorithm vtkPVGeometryFilter(0x7436500) returned failure for request: vtkInformation (0x5737250)<br> Debug: Off<br> Modified Time: 999943<br> Reference Count: 1<br> Registered Events: (none)<br> Request: REQUEST_DATA_OBJECT<br> FORWARD_DIRECTION: 0<br> FROM_OUTPUT_PORT: 0<br> ALGORITHM_AFTER_FORWARD: 1<br><br><br><br><br>Segmentation fault (core dumped)<br><br><br><br><br><br>------------------------<br></div><div>$ ncdump -h <a href="http://rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300.nc" target="_blank">rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300.nc</a><br>netcdf rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300 {<br>dimensions:<br> x = 512 ;<br> y = 512 ;<br> z = 64 ;<br> time = UNLIMITED ; // (1 currently)<br>variables:<br> float x(x) ;<br> x:units = "m" ;<br> float y(y) ;<br> y:units = "m" ;<br> float z(z) ;<br> z:units = "m" ;<br> z:long_name = "height" ;<br> float time(time) ;<br> time:units = "d" ;<br> time:long_name = "time" ;<br> float p(z) ;<br> p:units = "mb" ;<br> p:long_name = "pressure" ;<br> float zi(z) ;<br> zi:units = "m" ;<br> zi:long_name = "intfc_ht" ;<br> float U(time, z, y, x) ;<br> U:long_name = "X Wind Component " ;<br> U:units = "m/s " ;<br> float V(time, z, y, x) ;<br> V:long_name = "Y Wind Component " ;<br> V:units = "m/s " ;<br> float W(time, z, y, x) ;<br> W:long_name = "Z Wind Component " ;<br> W:units = "m/s " ;<br> float PP(time, z, y, x) ;<br> PP:long_name = "Pressure Perturbation " ;<br> PP:units = "Pa " ;<br> float QRAD(time, z, y, x) ;<br> QRAD:long_name = "Radiative heating rate " ;<br> QRAD:units = "K/day " ;<br> float TABS(time, z, y, x) ;<br> TABS:long_name = "Absolute Temperature " ;<br> TABS:units = "K " ;<br> float QV(time, z, y, x) ;<br> QV:long_name = "Water Vapor " ;<br> QV:units = "g/kg " ;<br> float QN(time, z, y, x) ;<br> QN:long_name = "Non-precipitating Condensate (Water+Ice) " ;<br> QN:units = "g/kg " ;<br> float QP(time, z, y, x) ;<br> QP:long_name = "Precipitating Water (Rain+Snow) " ;<br> QP:units = "g/kg " ;<br> float LQRAD(time, z, y, x) ;<br> LQRAD:long_name = "LW Radiative heating rate " ;<br> LQRAD:units = "K/day " ;<br> float SQRAD(time, z, y, x) ;<br> SQRAD:long_name = "SW Radiative heating rate " ;<br> SQRAD:units = "K/day " ;<br>}<br></div><div><br></div></div></div></div></div></div></div></div></div></div>
</blockquote></div><br></div>
</div></div><br></div></div>_______________________________________________<br>
Powered by <a href="http://www.kitware.com" rel="noreferrer" target="_blank">www.kitware.com</a><br>
<br>
Visit other Kitware open-source projects at <a href="http://www.kitware.com/opensource/opensource.html" rel="noreferrer" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
<br>
Please keep messages on-topic and check the ParaView Wiki at: <a href="http://paraview.org/Wiki/ParaView" rel="noreferrer" target="_blank">http://paraview.org/Wiki/ParaView</a><br>
<br>
Search the list archives at: <a href="http://markmail.org/search/?q=ParaView" rel="noreferrer" target="_blank">http://markmail.org/search/?q=ParaView</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
<a href="http://public.kitware.com/mailman/listinfo/paraview" rel="noreferrer" target="_blank">http://public.kitware.com/mailman/listinfo/paraview</a><br>
<br></blockquote></div><span><font color="#888888"><br><br clear="all"><div><br></div>-- <br><div><div dir="ltr"><font face="trebuchet ms, sans-serif"><i>| Aashish Chaudhary <br>| Technical Leader <br>| Kitware Inc. <br></i></font><div><i><font face="trebuchet ms, sans-serif">| </font><a href="http://www.kitware.com/company/team/chaudhary.html" target="_blank">http://www.kitware.com/company/team/chaudhary.html</a></i></div></div></div>
</font></span></div>
<br>_______________________________________________<br>
Powered by <a href="http://www.kitware.com" rel="noreferrer" target="_blank">www.kitware.com</a><br>
<br>
Visit other Kitware open-source projects at <a href="http://www.kitware.com/opensource/opensource.html" rel="noreferrer" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
<br>
Please keep messages on-topic and check the ParaView Wiki at: <a href="http://paraview.org/Wiki/ParaView" rel="noreferrer" target="_blank">http://paraview.org/Wiki/ParaView</a><br>
<br>
Search the list archives at: <a href="http://markmail.org/search/?q=ParaView" rel="noreferrer" target="_blank">http://markmail.org/search/?q=ParaView</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
<a href="http://public.kitware.com/mailman/listinfo/paraview" rel="noreferrer" target="_blank">http://public.kitware.com/mailman/listinfo/paraview</a><br>
<br></blockquote></div></div></div><br></div>
</blockquote></div><br></div>