<div dir="ltr">Does anyone have any feedback on this issue?<div><br></div><div>I have no idea how to debug or continue. I will have to abandon paraview for my project unless I can get some help somehow.</div><div><br></div><div>Thanks,</div><div><br></div><div><div>Ryan Abernathey</div><div>Assistant Professor</div><div>Columbia University, Department of Earth & Environmental Sciences</div><div>Lamont-Doherty Earth Observatory, Division of Ocean & Climate Physics</div><div>205 C Oceanography</div><div>61 Route 9W - PO Box 1000</div><div>Palisades, NY 10964-8000</div><div><a href="http://rabernat.github.io">http://rabernat.github.io</a></div><div><a href="mailto:rpa@ldeo.columbia.edu">rpa@ldeo.columbia.edu</a></div></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Oct 19, 2015 at 4:59 PM, Ryan Abernathey <span dir="ltr"><<a href="mailto:ryan.abernathey@gmail.com" target="_blank">ryan.abernathey@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div><div><div><div><div>Hello,<br><br></div>I am extremely frustrated and stuck on this problem. Any advice would be appreciated.<br><br></div>I am working with a dataset of 2400 sequentially numbered netCDF files (generic & CF conventions).<br><br></div>In a fresh pipeline, Paraview is able to recognizes these files as a single source and load them correctly. I then create a standard pipeline involving various filters (contour, etc., nothing funny) and save a state file.<br><br></div>When I attempt to load the state file, I get the following segmentation fault. Further down you can see a ncdump of the offending file.<br><br></div><div>Would appreciate any advice on how to debug / overcome this issue. Is it a bug? It sure feels like one...<br></div><div><br></div></div>Best,<br></div>Ryan Abernathey<br><div><div><div><div><div><div><div><div><div><br><br>ERROR: In /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/IO/NetCDF/vtkNetCDFReader.cxx, line 822<br>vtkNetCDFCFReader (0x55c0620): netCDF Error: NetCDF: Index exceeds dimension bound<br><br><br>ERROR: In /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784<br>vtkPVCompositeDataPipeline (0x5be23d0): Algorithm vtkFileSeriesReader(0x4c0c3e0) returned failure for request: vtkInformation (0x8141700)<br>  Debug: Off<br>  Modified Time: 999905<br>  Reference Count: 1<br>  Registered Events: (none)<br>  Request: REQUEST_DATA<br>  FORWARD_DIRECTION: 0<br>  FROM_OUTPUT_PORT: 0<br>  ALGORITHM_AFTER_FORWARD: 1<br><br><br><br><br>ERROR: In /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784<br>vtkCompositeDataPipeline (0x744fde0): Algorithm vtkPVGeometryFilter(0x7436500) returned failure for request: vtkInformation (0x5737250)<br>  Debug: Off<br>  Modified Time: 999943<br>  Reference Count: 1<br>  Registered Events: (none)<br>  Request: REQUEST_DATA_OBJECT<br>  FORWARD_DIRECTION: 0<br>  FROM_OUTPUT_PORT: 0<br>  ALGORITHM_AFTER_FORWARD: 1<br><br><br><br><br>Segmentation fault (core dumped)<br><br><br><br><br><br>------------------------<br></div><div>$ ncdump -h <a href="http://rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300.nc" target="_blank">rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300.nc</a><br>netcdf rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300 {<br>dimensions:<br>    x = 512 ;<br>    y = 512 ;<br>    z = 64 ;<br>    time = UNLIMITED ; // (1 currently)<br>variables:<br>    float x(x) ;<br>        x:units = "m" ;<br>    float y(y) ;<br>        y:units = "m" ;<br>    float z(z) ;<br>        z:units = "m" ;<br>        z:long_name = "height" ;<br>    float time(time) ;<br>        time:units = "d" ;<br>        time:long_name = "time" ;<br>    float p(z) ;<br>        p:units = "mb" ;<br>        p:long_name = "pressure" ;<br>    float zi(z) ;<br>        zi:units = "m" ;<br>        zi:long_name = "intfc_ht" ;<br>    float U(time, z, y, x) ;<br>        U:long_name = "X Wind Component                                                                " ;<br>        U:units = "m/s       " ;<br>    float V(time, z, y, x) ;<br>        V:long_name = "Y Wind Component                                                                " ;<br>        V:units = "m/s       " ;<br>    float W(time, z, y, x) ;<br>        W:long_name = "Z Wind Component                                                                " ;<br>        W:units = "m/s       " ;<br>    float PP(time, z, y, x) ;<br>        PP:long_name = "Pressure Perturbation                                                           " ;<br>        PP:units = "Pa        " ;<br>    float QRAD(time, z, y, x) ;<br>        QRAD:long_name = "Radiative heating rate                                                          " ;<br>        QRAD:units = "K/day     " ;<br>    float TABS(time, z, y, x) ;<br>        TABS:long_name = "Absolute Temperature                                                            " ;<br>        TABS:units = "K         " ;<br>    float QV(time, z, y, x) ;<br>        QV:long_name = "Water Vapor                                                                     " ;<br>        QV:units = "g/kg      " ;<br>    float QN(time, z, y, x) ;<br>        QN:long_name = "Non-precipitating Condensate (Water+Ice)                                        " ;<br>        QN:units = "g/kg      " ;<br>    float QP(time, z, y, x) ;<br>        QP:long_name = "Precipitating Water (Rain+Snow)                                                 " ;<br>        QP:units = "g/kg      " ;<br>    float LQRAD(time, z, y, x) ;<br>        LQRAD:long_name = "LW Radiative heating rate                                                       " ;<br>        LQRAD:units = "K/day     " ;<br>    float SQRAD(time, z, y, x) ;<br>        SQRAD:long_name = "SW Radiative heating rate                                                       " ;<br>        SQRAD:units = "K/day     " ;<br>}<br></div><div><br></div></div></div></div></div></div></div></div></div></div>
</blockquote></div><br></div>