<div dir="ltr"><div><div><div><div><div><div><div><div><div>Hello Dmitry,<br><br></div>I'm new with Xdmf and I don't know too many things...<br><br></div>First of all I see that in the Xdmf file you are pointing to:<br>data.h5:/data/topology/connectivity<br><br></div>The group /data doesn't exist, it should be:<br>data.h5:/topology/connectivity<br><br></div>The same happens with the geometry group.<br><br></div>After this it still not working... i propose to do small tests modifing the Xdmf file manually to see only the mesh, then some fields and finaly a time sequence. An start point could be:<br><br><blockquote style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex" class="gmail_quote"><?xml version="1.0" encoding="UTF-8" ?><br><!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []><br><Xdmf Version="2.0" xmlns:xi="<a href="http://www.w3.org/2001/XInclude">http://www.w3.org/2001/XInclude</a>"><br><Domain><br> <Grid Name="Mesh"><br> <Topology Dimensions="54653 4" TopologyType="Tetrahedron"><br> <DataItem Dimensions="54653 4" Format="HDF" NumberType="UInt">data.h5:/topology/connectivity</DataItem><br> </Topology><br> <Geometry GeometryType="XYZ"><br> <DataItem Dimensions="10803 3" Format="HDF" NumberType="Float">data.h5:/geometry/nodes</DataItem><br> </Geometry><br> </Grid><br></Domain><br></Xdmf><br></blockquote><br></div>Using tools like h5ls or h5dump you can watch the internal structure of the .h5 file, the datatypes, etc. etc. In order to check the coherence between H5 file and Xdmf metadata.<br><br></div>I hope it helps. <br></div>Best regards,<br></div>Víctor.<br></div><div class="gmail_extra"><br><div class="gmail_quote">2015-06-23 10:51 GMT+02:00 Dmitry Grebennikov <span dir="ltr"><<a href="mailto:dmitry.ew@gmail.com" target="_blank">dmitry.ew@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<br>
<div>I'm resending this message
without sending files because of size-limit.<br>
Here are the links to them:<br>
<a href="https://www.dropbox.com/s/pe9bmeq7ula673z/data.h5?dl=0" target="_blank">https://www.dropbox.com/s/pe9bmeq7ula673z/data.h5?dl=0</a><br>
<a href="https://www.dropbox.com/s/nh1569inxqy7xol/data.xdmf?dl=0" target="_blank">https://www.dropbox.com/s/nh1569inxqy7xol/data.xdmf?dl=0</a><br>
<br>
Thanks.<br>
<br>
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<th nowrap valign="BASELINE" align="RIGHT">Subject:
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<td>Problem with opening Xdmf file in Paraview</td>
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<th nowrap valign="BASELINE" align="RIGHT">Date: </th>
<td>Tue, 23 Jun 2015 11:45:30 +0300</td>
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<th nowrap valign="BASELINE" align="RIGHT">From: </th>
<td>Dmitry Grebennikov <a href="mailto:dmitry.ew@gmail.com" target="_blank"><dmitry.ew@gmail.com></a></td>
</tr>
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<th nowrap valign="BASELINE" align="RIGHT">To: </th>
<td><a href="mailto:xdmf@lists.kitware.com" target="_blank">xdmf@lists.kitware.com</a>, <a href="mailto:paraview@paraview.org" target="_blank">paraview@paraview.org</a></td>
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<font face="Droid Sans">Hi there!<br>
<br>
Please, could you help me to figure out what is the problem with
opening of my Xdmf file in Paraview?<br>
The Xdmf file and corresponding HDF file (3Mb) with data are
attached.<br>
<br>
I generated Xdmf file to view results of my test simulation with
time-varying data on the constant tetrahedral mesh.<br>
I can't understand is there any problems with Xdmf file (or
HDF)?<br>
When I try to open it in Paraview, the following error occurs:<br>
<br>
</font><br>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000">ERROR: In /home/coincoin/build/paraview/src/ParaView-v4.3.1-source/VTK/IO/Xdmf2/vtkXdmfReader.cxx, line 409</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000">vtkXdmfReader (0x4d42470): Failed to read data.</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px;font-family:'Courier';font-size:10pt;color:#800000">
</p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px;font-family:'Courier';font-size:10pt;color:#800000">
</p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000">ERROR: In /home/coincoin/build/paraview/src/ParaView-v4.3.1-source/VTK/Common/ExecutionModel/vtkExecutive.cxx, line 784</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000">vtkPVCompositeDataPipeline (0x4d81ae0): Algorithm vtkFileSeriesReader(0x5e9f3f0) returned failure for request: vtkInformation (0x4e1fab0)</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> Debug: Off</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> Modified Time: 165132</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> Reference Count: 1</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> Registered Events: (none)</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> Request: REQUEST_DATA</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> FROM_OUTPUT_PORT: 0</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> ALGORITHM_AFTER_FORWARD: 1</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px"><span style="font-family:'Courier';font-size:10pt;color:#800000"> FORWARD_DIRECTION: 0</span></p>
<p style="margin-top:0px;margin-bottom:0px;margin-left:0px;margin-right:0px;text-indent:0px;font-family:'Courier';font-size:10pt;color:#800000">
</p>
<br>
If someone would be so kind to try to figure out what's the
problem, I'll be very thankful!<br>
<br>
Thanks in advance!<span class="HOEnZb"><font color="#888888"><br>
Dmitry<br>
<br>
<br>
</font></span></div>
<br>
</div>
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