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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Excellent, thanks! I’ll let you know if it works.<o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Chuck Atkins [mailto:chuck.atkins@kitware.com]
<br>
<b>Sent:</b> Monday, July 25, 2016 7:16 PM<br>
<b>To:</b> Scott, W Alan <wascott@sandia.gov><br>
<b>Cc:</b> paraview-developers@paraview.org<br>
<b>Subject:</b> [EXTERNAL] Re: [Paraview-developers] superbuild again on intel compilers on Linux cluster<o:p></o:p></span></p>
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<p class="MsoNormal">Hi Alan,<br>
<br>
This is a known problem with C++11 compatibility and the Intel compiler. Intel's C++ compiler provides the necessary language features for C++ 11 but does not provide any of the standard C++ library headers for it. Instead it pulls headers from an available
g++. If a new enough g++ is not used for the headers then you end up with a very strange situation of half broken C++11 support with language support but no library support. To make matters worse, different versions of icpc are (in)compatible with different
versions of g++ headers.<o:p></o:p></p>
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<p class="MsoNormal">You can fix it by changing which g++ icpc is using to get the correct C++11 support using the GCCROOT, GXX_INCLUDE, and GXX_ROOT environment variables. If none of the variables are specified then it will be pulling C++ headers from your
available system compiler, which on EL6 is gcc 4.4 which definitely does not have the necessary C++11 support. Intel <= 16.0.2 should work correctly with g++ 4.8.x and 4.9.x headers while >= 16.0.3 should work with g++ 4.8.x all the way through 5.x.<br>
<br>
This will also be an issue for anybody else trying to use C++11 and icpc to get complete support.<o:p></o:p></p>
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<p class="MsoNormal">----------<br>
Chuck Atkins<br>
Staff R&D Engineer, Scientific Computing<br>
Kitware, Inc.<br>
(518) 881-1183<o:p></o:p></p>
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<p class="MsoNormal">On Mon, Jul 25, 2016 at 7:54 PM, Scott, W Alan <<a href="mailto:wascott@sandia.gov" target="_blank">wascott@sandia.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I am also trying to do Intel superbuilds on a Linux, Intel compiler, as we will have to do for Trinity. We are failing trying to find libatomic – a gnu library! That shouldn’t
happen, I would figure. Anyway, here is where I ended up:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">cMakeVars = -DCMAKE_INSTALL_PREFIX:PATH=/projects/viz/paraview/ParaView/5.1.1-sbi-mesa/Linux-chama-x86_64 -DBUILD_TESTING:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DParaView_FROM_GIT:BOOL=OFF
-DParaView_FROM_SOURCE_DIR:BOOL=ON -DPARAVIEW_SOURCE_DIR:PATH=/projects/viz/paraview/src/ParaView/5.1.1-sbi/ParaView5 -DPARAVIEW_ALWAYS_SECURE_CONNECTION:BOOL=ON -DENABLE_paraview:BOOL=ON -DENABLE_ffmpeg:BOOL=ON -DENABLE_python:BOOL=ON -DENABLE_numpy:BOOL=ON
-DENABLE_png:BOOL=ON -DENABLE_osmesa:BOOL=ON -DENABLE_cgns:BOOL=ON -DENABLE_silo:BOOL=ON -DENABLE_visitbridge:BOOL=ON -DMPI_COMPILER:FILEPATH=/opt/openmpi-1.8-intel//bin/mpicxx -DPARAVIEW_ALWAYS_SECURE_CONNECTION:BOOL=ON -DENABLE_mpi:BOOL=ON -DPARAVIEW_USE_MPI:BOOL=ON
-DMPI_INCLUDE_PATH:PATH=/opt/openmpi-1.8-intel//include/ <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Using git-describe to determine ParaView version<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Could not use git to determine source version, using version
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Using ParaView Version: 5.1.0 (5|1|0|)<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Using system EGL. Pick correct python based on your deployment target<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling zlib since needed by: boost;cgns;ffmpeg;hdf5;png;python;silo<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling szip since needed by: hdf5<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling hdf5 since needed by: cgns;silo<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling cgns as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling ffmpeg as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling mpi as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling bzip2 since needed by: python<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling png as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling python as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling numpy as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling llvm since needed by: osmesa<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling osmesa as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling boost since needed by: visitbridge<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling silo as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling visitbridge as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Enabling paraview as requested.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- PROJECTS_ENABLED zlib;szip;hdf5;cgns;ffmpeg;mpi;bzip2;png;python;numpy;llvm;osmesa;boost;silo;visitbridge;paraview<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Configuring done<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Generating done<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Build files have been written to: /projects/viz/paraview/ParaView/5.1.1-sbi-mesa/Linux-chama-x86_64/Build<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 7%] Built target zlib<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 14%] Built target szip<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 20%] Built target hdf5<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 27%] Built target cgns<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 33%] Built target boost<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 39%] Built target ffmpeg<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 45%] Built target silo<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 51%] Built target visitbridge<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 57%] Built target png<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 63%] Built target bzip2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 70%] Built target python<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 76%] Built target mpi<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 82%] Built target numpy<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[ 83%] Performing configure step for 'llvm'<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">CMake Error at cmake/modules/CheckAtomic.cmake:36 (message):<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> Host compiler appears to require libatomic, but cannot find it.<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Call Stack (most recent call first):<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> cmake/config-ix.cmake:296 (include)<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> CMakeLists.txt:407 (include)<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">-- Configuring incomplete, errors occurred!<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">See also "/projects/viz/paraview/ParaView/5.1.1-sbi-mesa/Linux-chama-x86_64/Build/llvm/src/llvm-build/CMakeFiles/CMakeOutput.log".<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">See also "/projects/viz/paraview/ParaView/5.1.1-sbi-mesa/Linux-chama-x86_64/Build/llvm/src/llvm-build/CMakeFiles/CMakeError.log".<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[2]: *** [llvm/src/llvm-stamp/llvm-configure] Error 1<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">make[1]: *** [CMakeFiles/llvm.dir/all] Error 2<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks for any help,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Alan<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">--------------------------------------------------------<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">W. Alan Scott<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">ParaView Support Manager<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">SAIC<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Sandia National Laboratories, MS 0822<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Org 9326 - Building 880 A1-K<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="tel:%28505%29%20284-0932" target="_blank">(505) 284-0932</a> FAX
<a href="tel:%28505%29%20284-5619" target="_blank">(505) 284-5619</a><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">---------------------------------------------------------<o:p></o:p></p>
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