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<p>Thank you so much for your help.</p>
<p>I will read that paper and try again.</p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>发件人:</b> Francois Budin <francois.budin@kitware.com><br>
<b>发送时间:</b> 2017年5月22日 8:03:49<br>
<b>收件人:</b> Zou Jing<br>
<b>抄送:</b> Chr. Rossmanith; insight-users@itk.org<br>
<b>主题:</b> Re: 答复: [ITK-users] 答复: 答复: 答复: watershed</font>
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<div>Hello,<br>
<br>
</div>
I am glad you were able to run the program. It can be difficult to find the correct parameters to obtain the desired results. You can read the Insight Journal publication associated to this filter [1] to understand which parameters are available and how to
integrate this filter in a pipeline.<br>
</div>
You can also look at the ITK tests for that filter to see the values that are used in that case [2][3].<br>
<br>
</div>
Hope this helps,<br>
</div>
Francois<br>
<div>
<div>
<div><br>
[1] <a href="http://www.insight-journal.org/browse/publication/92">http://www.insight-journal.org/browse/publication/92</a><br>
[2] <a href="https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Watersheds/test/CMakeLists.txt#L31-L55">
https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Watersheds/test/CMakeLists.txt#L31-L55</a><br>
[3] <a href="https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Watersheds/test/itkMorphologicalWatershedFromMarkersImageFilterTest.cxx">
https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Watersheds/test/itkMorphologicalWatershedFromMarkersImageFilterTest.cxx</a><br>
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<div class="gmail_extra"><br>
<div class="gmail_quote">On Sat, May 20, 2017 at 2:55 AM, Zou Jing <span dir="ltr">
<<a href="mailto:zjinger@hotmail.com" target="_blank">zjinger@hotmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<p>Hello,</p>
<p>Now I can run the program, but the result image is all write. </p>
</div>
<hr style="display:inline-block;width:98%">
<div id="m_-2676238116518043032divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>发件人:</b> Zou Jing<br>
<b>发送时间:</b> 2017年5月20日 11:37:00<br>
<b>收件人:</b> Francois Budin<br>
<b>抄送:</b> Chr. Rossmanith; <a href="mailto:insight-users@itk.org" target="_blank">
insight-users@itk.org</a><br>
<b>主题:</b> 答复: [ITK-users] 答复: 答复: 答复: watershed</font>
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<p>Thank you very much.</p>
<p>I've found the filter, but I have trouble in implementing it.</p>
<p>Have you ever tested that. </p>
<p>My error is this:</p>
<p>Debug Error!</p>
<p>Program:</p>
<p>...Debug\<span>itkMorphologicalWater<wbr>shedFromMarkersImageFilterTest<wbr>.exe</span></p>
<p><span>R6010<br>
-abort() has been called</span></p>
<p><span>(Please Retry to debug the application)</span></p>
<p><br>
</p>
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<div id="m_-2676238116518043032divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>发件人:</b> Francois Budin <<a href="mailto:francois.budin@kitware.com" target="_blank">francois.budin@kitware.com</a>><br>
<b>发送时间:</b> 2017年5月19日 20:46:53<br>
<b>收件人:</b> Zou Jing<br>
<b>抄送:</b> Chr. Rossmanith; <a href="mailto:insight-users@itk.org" target="_blank">
insight-users@itk.org</a><br>
<b>主题:</b> Re: [ITK-users] 答复: 答复: 答复: watershed</font>
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<div>Hello Zou Jing,<br>
<br>
</div>
What do you mean by the fact that you cannot find the filter? Do you have compilation errors? Or you cannot find the implementation of the filter in ITK? If it is the latter, you can find the filter is here [1]<br>
</div>
Let me know if this helps,<br>
<br>
</div>
Francois<br>
<div>
<div>[1] <a href="https://github.com/InsightSoftwareConsortium/ITK/blob/v4.11.0/Modules/Nonunit/Review/include/itkMorphologicalWatershedFromMarkersImageFilter.hxx" id="m_-2676238116518043032LPlnk464659" target="_blank">
https://github.com/<wbr>InsightSoftwareConsortium/ITK/<wbr>blob/v4.11.0/Modules/Nonunit/<wbr>Review/include/<wbr>itkMorphologicalWatershedFromM<wbr>arkersImageFilter.hxx</a>
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<a id="m_-2676238116518043032LPImageAnchor_14952506682830.4260571488819025" href="https://github.com/InsightSoftwareConsortium/ITK/blob/v4.11.0/Modules/Nonunit/Review/include/itkMorphologicalWatershedFromMarkersImageFilter.hxx" style="display:table-cell;text-align:center" target="_blank"><img id="m_-2676238116518043032LPThumbnailImageID_14952506682830.33485402306340184" style="display:inline-block;max-width:250px;max-height:250px;height:250px;width:250px;border-width:0px;vertical-align:bottom" width="250" height="250" src="https://avatars0.githubusercontent.com/u/319479?v=3&s=400"></a></div>
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<div id="m_-2676238116518043032LPTitle_14952506682840.4358363554119309" style="color:rgb(0,120,215);font-weight:normal;font-size:21px;font-family:"Microsoft YaHei UI","Microsoft YaHei",微软雅黑,SimSun,宋体,sans-serif;line-height:21px">
<a id="m_-2676238116518043032LPUrlAnchor_14952506682850.018354037526413736" href="https://github.com/InsightSoftwareConsortium/ITK/blob/v4.11.0/Modules/Nonunit/Review/include/itkMorphologicalWatershedFromMarkersImageFilter.hxx" style="text-decoration:none" target="_blank">InsightSoftwareConsortium/ITK</a></div>
<div id="m_-2676238116518043032LPMetadata_14952506682850.3589682762424664" style="margin:10px 0px 16px;color:rgb(102,102,102);font-weight:normal;font-family:"Microsoft YaHei UI","Microsoft YaHei",微软雅黑,SimSun,宋体,sans-serif;font-size:14px;line-height:14px">
<a href="http://github.com" target="_blank">github.com</a></div>
<div id="m_-2676238116518043032LPDescription_14952506682860.4506418592914889" style="display:block;color:rgb(102,102,102);font-weight:normal;font-family:"Microsoft YaHei UI","Microsoft YaHei",微软雅黑,SimSun,宋体,sans-serif;font-size:14px;line-height:20px;max-height:100px;overflow:hidden">
ITK - Insight Segmentation and Registration Toolkit -- Mirror</div>
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<div class="gmail_extra"><br>
<div class="gmail_quote">On Fri, May 19, 2017 at 3:14 AM, Zou Jing <span dir="ltr">
<<a href="mailto:zjinger@hotmail.com" target="_blank">zjinger@hotmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<div id="m_-2676238116518043032m_2262664654607350220divtagdefaultwrapper" style="font-size:12pt;color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols" dir="ltr">
<p>Thank you,I've enabled that in CMake.</p>
<p>But I still cannot find <span> itkMorphologicalWatershe<wbr>dFromMarkersImageFilter</span></p>
</div>
<hr style="display:inline-block;width:98%">
<div id="m_-2676238116518043032m_2262664654607350220divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>发件人:</b> Insight-users <<a href="mailto:insight-users-bounces@itk.org" target="_blank">insight-users-bounces@itk.org</a><wbr>>
代表 Chr. Rossmanith <<a href="mailto:cr@neuro.ma.uni-heidelberg.de" target="_blank">cr@neuro.ma.uni-heidelberg.de</a><wbr>><br>
<b>发送时间:</b> 2017年5月19日 13:53:48<br>
<b>收件人:</b> <a href="mailto:insight-users@itk.org" target="_blank">insight-users@itk.org</a><br>
<b>主题:</b> Re: [ITK-users] 答复: 答复: watershed</font>
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<div class="m_-2676238116518043032h5">
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<div class="m_-2676238116518043032m_2262664654607350220moz-cite-prefix">It's an option in cmake: Module_ITKReview, you have to toggle to advanced mode (t in ccmake) to find it.<br>
<br>
Christina<br>
<br>
On 19.05.2017 05:27, Zou Jing wrote:<br>
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<blockquote type="cite">
<div id="m_-2676238116518043032m_2262664654607350220divtagdefaultwrapper" style="font-size:12pt;color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols" dir="ltr">
<p>Thank you.</p>
<p>I am sorry that I don't know how to <span>enable "review".</span></p>
<p><span style="color:rgb(33,33,33);font-family:"Microsoft YaHei UI","Microsoft YaHei",微软雅黑,SimSun,宋体,sans-serif,serif,EmojiFont;font-size:15px">I'm a novice.</span></p>
<p><span style="color:rgb(33,33,33);font-family:"Microsoft YaHei UI","Microsoft YaHei",微软雅黑,SimSun,宋体,sans-serif,serif,EmojiFont;font-size:15px">Can you help me?Thanks very much.</span></p>
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<div id="m_-2676238116518043032m_2262664654607350220divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>发件人:</b> Richard Beare
<a class="m_-2676238116518043032m_2262664654607350220moz-txt-link-rfc2396E" href="mailto:richard.beare@gmail.com" target="_blank">
<richard.beare@gmail.com></a><br>
<b>发送时间:</b> 2017年5月19日 11:12:30<br>
<b>收件人:</b> Zou Jing<br>
<b>抄送:</b> Francois Budin; <a class="m_-2676238116518043032m_2262664654607350220moz-txt-link-abbreviated" href="mailto:insight-users@itk.org" target="_blank">
insight-users@itk.org</a><br>
<b>主题:</b> Re: [ITK-users] 答复: watershed</font>
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<div>
<div dir="ltr">You will need to enable "review" to get morphological watershed in 4.11</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Fri, May 19, 2017 at 12:10 PM, Zou Jing <span dir="ltr">
<<a href="mailto:zjinger@hotmail.com" target="_blank">zjinger@hotmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div>
<div id="m_-2676238116518043032m_2262664654607350220m_421841285419922105divtagdefaultwrapper" style="font-size:12pt;color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols" dir="ltr">
<p><span>Hi, Francois</span></p>
<p>Thank you very much.</p>
<p><span>The version of my ITK is 4.11.0. </span>I checked <span>the watershed module, but there is no such thing as <span>itkMorphologicalWatershedFr<wbr>omMarkersImageFilter.</span></span></p>
<p><span><span>I just found <span>itkIsolatedWatershedImag<wbr>eFilterTest.cxx, <span>itkTobogganIm<wbr>ageFilterTest.cxx and <span>itkWatershedImageFilterTes<wbr>t.cxx in the test folder.</span></span></span></span></span></p>
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<hr style="display:inline-block;width:98%">
<div id="m_-2676238116518043032m_2262664654607350220m_421841285419922105divRplyFwdMsg" dir="ltr">
<font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>发件人:</b> Francois Budin <<a href="mailto:francois.budin@kitware.com" target="_blank">francois.budin@kitware.com</a>><br>
<b>发送时间:</b> 2017年5月18日 20:21:41<br>
<b>收件人:</b> Zou Jing<br>
<b>抄送:</b> <a href="mailto:insight-users@itk.org" target="_blank">insight-users@itk.org</a><br>
<b>主题:</b> Re: [ITK-users] watershed</font>
<div> </div>
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<div dir="ltr">
<div>
<div>
<div>Hello Zou Jing,<br>
<br>
</div>
The itkMorphologicalWatershedFromM<wbr>arkersImageFilter was recently moved from the review module to the watershed module. If you are using a recent version of ITK (4.12rc01, 4.12rc02), the filter you are looking for will be in the watershed module. Otherwise
it should be in the review module.<br>
</div>
<br>
Hope this helps,<br>
</div>
Francois<br>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Thu, May 18, 2017 at 4:19 AM, Zou Jing <span dir="ltr">
<<a href="mailto:zjinger@hotmail.com" target="_blank">zjinger@hotmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">
<div id="m_-2676238116518043032m_2262664654607350220m_421841285419922105m_6679828933384082813divtagdefaultwrapper" style="font-size:12pt;color:rgb(0,0,0);font-family:Calibri,Arial,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols" dir="ltr">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif,serif,EmojiFont;font-size:16px">
Dear all<br>
I want to segment CTA images using watershed algorithm, The result of WatershedSegmentation2.cxx was not ideal. I find that someone use itkMorphologicalWatershedF<wbr>romMarkersImageFilter, but I cannot find that.<br>
Could anyone help me?<br>
Thanks.</div>
<div><br>
</div>
<br>
</div>
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<br>
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