<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Hi Matias,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">I didn't compile to use with Slicer. I only open the input and output image in Slicer to visualize them.</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">But making a Slicer CLI module is fairly easy. You can take a look at <a href="https://github.com/Slicer/Slicer/tree/master/Modules/CLI/AddScalarVolumes/">one</a> of the existing modules, <a href="https://www.slicer.org/wiki/Documentation/Nightly/Developers/Modules">docs</a> including <a href="https://www.slicer.org/wiki/Documentation/Nightly/Developers/ExtensionWizard">extension wizard</a>.</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Regards,</div><div class="gmail_default"><font face="verdana, sans-serif">Dženan Zukić, PhD, Senior R&D Engineer, Kitware (Carrboro, N.C.)</font></div></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Apr 14, 2017 at 12:26 PM, Matias <span dir="ltr"><<a href="mailto:matimontg@gmail.com" target="_blank">matimontg@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Thanks Dzenan. I actually use OrigenX and OrigenY to assign it to the DCM tags. Just curious, how did you compile to use with Slicer?</div><br><div class="gmail_quote"><span class=""><div dir="ltr">El jue., 13 de abr. de 2017 a la(s) 12:14, Dženan Zukić [via ITK - Users] <<a href="http:///user/SendEmail.jtp?type=node&node=38121&i=0" rel="nofollow" link="external" target="_blank">[hidden email]</a>> escribió:<br></div></span><blockquote style="border-left:2px solid #cccccc;padding:0 1em" class="gmail_quote"><span class="">
<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Hi Matias,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">you are not using origenX or origenY after they are defined. But your program (with modifications to make it compile) works for me:</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><img src="http://itk-users.7.n7.nabble.com/attachment/38116/0/Screenshot%202017-04-13%2011.09.11.jpg" alt="Inline image 1" width="528" height="562"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Regards,</div><div class="gmail_default"><font face="verdana, sans-serif">Dženan Zukić, PhD, Senior R&D Engineer, Kitware (Carrboro, N.C.)</font></div></div></div></div></span><div><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Apr 8, 2017 at 6:08 PM, Matias <span dir="ltr"><<a href="http:///user/SendEmail.jtp?type=node&node=38116&i=0" rel="nofollow" link="external" target="_blank">[hidden email]</a>></span> wrote:<br>Hi,
I'm rotating a volume (Using the Euler3DTransform) and the final set of slices are half black or empty.
here's an example when rotating a volume of 10 slices:
Am I missing something such as changing the origin or maybe computing the center incorrectly? (The center is passed as parameter from another program)
<img src="http://itk-users.7.n7.nabble.com/file/n38081/capture.jpg" border="0">
And here's the code I'm using:
typedef itk::ResampleImageFilter<<wbr>ImageType, ImageType> FilterType;
FilterType::Pointer FiltroResample = FilterType::New();
FiltroResample->SetInput(<wbr>reader->GetOutput());
typedef itk::<wbr>LinearInterpolateImageFunction<wbr><ImageType, double > InterpolatorType;
InterpolatorType::Pointer interpolator = InterpolatorType::New();
FiltroResample-><wbr>SetInterpolator(interpolator);
FiltroResample-><wbr>SetOutputDirection(inputImage-<wbr>>GetDirection());
FiltroResample-><wbr>SetOutputOrigin(inputImage-><wbr>GetOrigin());
ImageType::SizeType inputSize = inputImage-><wbr>GetLargestPossibleRegion().<wbr>GetSize();
FiltroResample->SetSize(<wbr>inputSize);
const ImageType::SpacingType& inputSpacing = inputImage->GetSpacing();
FiltroResample-><wbr>SetOutputSpacing(inputSpacing)<wbr>;
FiltroResample-><wbr>SetDefaultPixelValue(-1000);
typedef itk::Euler3DTransform< double > TransformType; //Transform
TransformType::Pointer transform = TransformType::New();
double alfa, beta, gamma, centro_rotacion_X, centro_rotacion_Y, centro_rotacion_Z, origenX,origenY;
gamma = atof(argv[2]);
beta = atof(argv[3]);
alfa = atof(argv[4]);
centro_rotacion_X = atof(argv[5]);
centro_rotacion_Y = atof(argv[6]);
centro_rotacion_Z = atof(argv[7]);
origenX = atof(argv[8]);
origenY = atof(argv[9]);
transform->SetRotation(gamma, beta, alfa);
double centro[3] = { centro_rotacion_X, centro_rotacion_Y, centro_rotacion_Z };
transform->SetCenter(centro);
FiltroResample->SetTransform(<wbr>transform);
FiltroResample->Update();
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