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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">The point I’m trying to make is that you should not start developing a custom application from scratch before you have a complete, proven, and tested solution.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">You can develop and test solutions very quickly by using existing application frameworks (3D Slicer, MITK, Paraview, etc). They all allow writing plugins to add custom algorithms
or streamlined user interface.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">Andras<o:p></o:p></span></p>
<p class="MsoNormal"><a name="_MailEndCompose"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><o:p> </o:p></span></a></p>
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<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Abdelkhalek Bakkari [mailto:bakkari.abdelkhalek@hotmail.fr]
<br>
<b>Sent:</b> December 3, 2016 18:08<br>
<b>To:</b> Andras Lasso <lasso@queensu.ca>; insight-users <insight-users@itk.org><br>
<b>Subject:</b> Re: [ITK] [ITK-users] 3D Binary Mask to Point Set - 3D Image Registration -<o:p></o:p></span></p>
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<p><span style="color:black"><o:p> </o:p></span></p>
<p><span style="color:black">Hi Andras,<o:p></o:p></span></p>
<p><span style="color:black"><o:p> </o:p></span></p>
<p><span style="color:black">I am not using just using examples. But, I am creating my own application from existing examples in ITK.<o:p></o:p></span></p>
<p><span style="color:black"><o:p> </o:p></span></p>
<p><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black"> Andras Lasso <<a href="mailto:lasso@queensu.ca">lasso@queensu.ca</a>><br>
<b>Sent:</b> 03 December 2016 23:57<br>
<b>To:</b> Abdelkhalek Bakkari<br>
<b>Subject:</b> RE: [ITK] [ITK-users] 3D Binary Mask to Point Set - 3D Image Registration -</span><span style="color:black">
<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black">Hi Abdelkhalek,<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> <o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black">ITK is a only for algorithm developers or advanced users (who can figure out how to perform simple operations such as applying a transform from the plenty
of examples and tests that are included in ITK). If you want to just use algorithms then it’s much more efficient to use applications that ITK is integrated into.<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> <o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black">For example, applying a transform to a DICOM series is a trivial operation in 3D Slicer (drag-and-drop DICOM directory to import your DICOM data, use DICOM
module to load DICOM series, drag-and-drop transform file to load transform, using Transforms module apply transform to image). You can also perform all kinds of analysis, segmentation, quantification, and visualization tasks in Slicer (you can visualize the
original and transformed volume, original and transformed landmark points, segmented surfaces; or the transformation itself). You can also fully script all operations if you need to process a large number of sequences in batch mode.<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> <o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black">Andras<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="color:black">From:
</span></b><span style="color:black"><a href="mailto:bakkari.abdelkhalek@hotmail.fr">Abdelkhalek Bakkari</a><br>
<b>Sent: </b>Saturday, December 3, 2016 17:39<br>
<b>To: </b><a href="mailto:insight-users@itk.org">insight-users</a><br>
<b>Subject: </b>[ITK] [ITK-users] 3D Binary Mask to Point Set - 3D Image Registration -<o:p></o:p></span></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:black"> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black">Hi, <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="color:black">I am a little familiar with ITK.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black">I just need to know how can I apply the model to Image registration 2 to a dicom image series.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><a href="https://itk.org/Doxygen/html/Examples_2RegistrationITKv4_2ModelToImageRegistration2_8cxx-example.html#_a13">https://itk.org/Doxygen/html/Examples_2RegistrationITKv4_2ModelToImageRegistration2_8cxx-example.html#_a13</a><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
<p><span style="color:black">Thank you inadvance.<o:p></o:p></span></p>
<p><span style="color:black">Kind regards,<o:p></o:p></span></p>
<p><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Garamond",serif;color:black">Abdelkhalek Bakkari</span><span style="color:black">
<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Garamond",serif;color:black">Ph.D candidate in Computer Science</span><span style="color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Garamond",serif;color:black;background:white">Institute of Applied Computer Science</span><span style="color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Garamond",serif;color:black">Lodz University of Technology, Poland</span><span style="color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
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