<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Hi Constance,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">I am using a recent VTK master.</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">I am right now looking into lesion sizing toolkit. I have push a commit to my fork:</div><div class="gmail_default"><font face="verdana, sans-serif"><a href="https://github.com/dzenanz/LesionSizingToolkit">https://github.com/dzenanz/LesionSizingToolkit</a></font><br></div><div class="gmail_default"><font face="verdana, sans-serif"><br></font></div><div class="gmail_default"><font face="verdana, sans-serif">This solves compile errors for me. I still have link errors (when building outside of ITK build tree, your first approach).</font></div><div class="gmail_default"><font face="verdana, sans-serif"><br></font></div><div class="gmail_default"><font face="verdana, sans-serif">It is end of workday in US Eastern so I will probably have to postpone this for tomorrow. But maybe someone else on the list will suggest a fix meanwhile :)</font></div><div class="gmail_default"><font face="verdana, sans-serif"><br></font></div><div class="gmail_default"><font face="verdana, sans-serif">Regards,</font></div><div class="gmail_default"><font face="verdana, sans-serif">Dženan</font></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Oct 13, 2016 at 6:20 PM, Owens,Constance A <span dir="ltr"><<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div lang="EN-US" link="blue" vlink="purple">
<div class="m_9060152467717221827WordSection1">
<p class="MsoNormal"><span style="font-family:"Calibri",sans-serif;color:#1f497d">Hi Dženan,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Calibri",sans-serif;color:#1f497d">My advisor wanted me to ask you what VTK version did you use exactly? He tried with VS2015 and still gets the same error. Below was his response to me:<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Using the VS2015 doesn’t help. Same errors.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">I believe it’s the problem of combination of ITK and VTK. Try to check with Dzenan what the VTK version he used and the cmake options for VTK. It seems that when VTK was included, all ITK header
files could not be located. No ITK directories were included (as shown).<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Calibri",sans-serif;color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><img width="852" height="603" style="width:8.875in;height:6.2812in" id="m_9060152467717221827Picture_x0020_1" src="cid:image001.png@01D22576.0B553D70"><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Calibri",sans-serif;color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Calibri",sans-serif;color:#1f497d">Thanks,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-family:"Calibri",sans-serif;color:#1f497d">Constance<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Dženan Zukić [mailto:<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>]
<br>
<b>Sent:</b> Thursday, October 13, 2016 1:45 PM<br>
<b>To:</b> Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>><br>
<b>Subject:</b> Re: FW: [ITK-users] Lesion Sizing Toolkit Build not successful<u></u><u></u></span></p><div><div class="h5">
<p class="MsoNormal"><u></u> <u></u></p>
<div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">I am using 3.6.2.<u></u><u></u></span></p>
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<p class="MsoNormal"><u></u> <u></u></p>
<div>
<p class="MsoNormal">On Thu, Oct 13, 2016 at 2:22 PM, Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>> wrote:<u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Dženan,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">What version of Cmake are you using? So I can rule it out as being a possible cause for the issues.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Thanks,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Constance</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Dženan Zukić [mailto:<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>]
<br>
<b>Sent:</b> Thursday, October 13, 2016 1:17 PM</span><u></u><u></u></p>
<div>
<div>
<p class="MsoNormal"><br>
<b>To:</b> Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>><br>
<b>Subject:</b> Re: [ITK-users] Lesion Sizing Toolkit Build not successful<u></u><u></u></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Constance,</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">those are the steps. What could be going on is that LesionSizingToolkit does not support such an old VisualStudio. You could try a
newer VS, such as 2013 or 2015.</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Also, I will try to figure out the problem in standalone build later.</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Regards,</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Dženan</span><u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<p class="MsoNormal">On Thu, Oct 13, 2016 at 1:10 PM, Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>> wrote:<u></u><u></u></p>
<blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Dženan,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">These are the steps that I followed:</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph" style="margin-left:.25in">
<span style="font-family:Wingdings">§</span><span style="font-size:7.0pt"> </span>
Download ITK<u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph"><span style="font-family:Symbol">-</span><span style="font-size:7.0pt">
</span>Use Git Clone and place in folder <span style="color:black">C:\ITK-v4.11\src</span><u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph" style="margin-left:.75in">
<span style="font-family:"Courier New"">o</span><span style="font-size:7.0pt"> </span>
<a href="https://itk.org/Wiki/ITK/Git/Download" target="_blank">https://itk.org/Wiki/ITK/Git/<wbr>Download</a><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.5in;vertical-align:middle">
<span style="font-family:Symbol;color:black">-</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Open Cmake</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Set source to folder C:\ITK-v4.11\src\ITK</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Set build to folder C:\ITK-v4.11\bin-x64</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Click ‘configure’</span><u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph" style="margin-left:1.0in">
<span style="font-family:Symbol">·</span><span style="font-size:7.0pt"> </span>
Set settings to ‘Visual Studio 9 2008 Win64’ <u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.5in;vertical-align:middle">
<span style="font-family:Symbol;color:black">-</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Once configuration is complete:
</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">These configuration parameters were suggested by ITK</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Enable</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:1.0in;vertical-align:middle">
<span style="font-family:Symbol;color:black">·</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Module_LesionSizingToolkit</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:1.0in;vertical-align:middle">
<span style="font-family:Symbol;color:red">·</span><span style="font-size:7.0pt;color:red">
</span><span style="font-family:"Calibri",sans-serif;color:red">LSTK_USE_VTK (Maybe I should not have done this?)</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Disable</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:1.0in;vertical-align:middle">
<span style="font-family:Symbol;color:black">·</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Build_Shared_Libs</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:1.0in;vertical-align:middle">
<span style="font-family:Symbol;color:black">·</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Build_Examples</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:1.0in;vertical-align:middle">
<span style="font-family:Symbol;color:black">·</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Build_Testing</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.75in;vertical-align:middle">
<span style="font-family:"Courier New";color:black">o</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Click ‘Configure’, again</span><u></u><u></u></p>
<p class="MsoNormal" style="margin-left:.5in;vertical-align:middle">
<span style="font-family:Symbol;color:black">-</span><span style="font-size:7.0pt;color:black">
</span><span style="font-family:"Calibri",sans-serif;color:black">Generate</span><u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph"><span style="font-family:Symbol">-</span><span style="font-size:7.0pt">
</span>Double click on file ‘ITK.sln’<u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph" style="margin-left:.75in">
<span style="font-family:"Courier New"">o</span><span style="font-size:7.0pt"> </span>
This can be found in folder: <span style="color:black">C:\ITK-v4.11\bin-x64</span><u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph"><span style="font-family:Symbol">-</span><span style="font-size:7.0pt">
</span>Right click on ‘ALL_BUILD’<u></u><u></u></p>
<p class="m_9060152467717221827m-6207486607843907833m-4319202360738182315msolistparagraph" style="margin-left:.75in">
<span style="font-family:"Courier New"">o</span><span style="font-size:7.0pt"> </span>
Select ‘Build’ <u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">And I still got all the errors that I mentioned in the first e-mail. My apologies if I am not understanding the steps you suggested.
I am very new to Cmake and Visual Studio, having experience only with MATLAB prior to this.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">I would like to be able to see the segmentation results when using LSTK. The goal would be to run LSTK with their data first, and
then to use it on our data.</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Thanks,<br>
Constance</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Dženan Zukić [mailto:</span><a href="mailto:dzenanz@gmail.com" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">dzenanz@gmail.com</span></a><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">]
<br>
<b>Sent:</b> Thursday, October 13, 2016 11:57 AM</span><u></u><u></u></p>
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<div>
<p class="MsoNormal"><br>
<b>To:</b> Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>><br>
<b>Subject:</b> Re: [ITK-users] Lesion Sizing Toolkit Build not successful<u></u><u></u></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Constance,</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">the "master version" is master branch in the official git repository:</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">git://<a href="http://itk.org/ITK.git" target="_blank">itk.org/ITK.git</a></span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">To see how to get it you can take a look here:<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><a href="http://itk.org/Wiki/ITK/Git/Develop" target="_blank"><span style="font-family:"Verdana",sans-serif">itk.org/Wiki/ITK/Git/Develop</span></a><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Regards,<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Dženan<u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
<div>
<p class="MsoNormal">On Thu, Oct 13, 2016 at 12:48 PM, Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>> wrote:<u></u><u></u></p>
<blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Dženan,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">What exactly is meant by ‘master version’ of ITK? Am I correct to assume that it is the most current release available at the link
provided below?</span><u></u><u></u></p>
<p class="MsoNormal"><a href="https://itk.org/ITK/resources/software.html" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">https://itk.org/ITK/resources/<wbr>software.html</span></a><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Thanks,<br>
Constance</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Dženan Zukić [mailto:</span><a href="mailto:dzenanz@gmail.com" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">dzenanz@gmail.com</span></a><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">]
<br>
<b>Sent:</b> Thursday, October 13, 2016 10:44 AM<br>
<b>To:</b> Owens,Constance A <</span><a href="mailto:CAOwens@mdanderson.org" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">CAOwens@mdanderson.org</span></a><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">></span><u></u><u></u></p>
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<div>
<p class="MsoNormal"><br>
<b>Subject:</b> Re: [ITK-users] Lesion Sizing Toolkit Build not successful<u></u><u></u></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"> <u></u><u></u></p>
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<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Yes, that's what was successful for me. You can also try turning Build_Examples and Build_Testing on later. I mainly keep them off
to reduce build time - as you might guess, I rebuild ITK a lot :)</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Regards,</span><u></u><u></u></p>
</div>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Dženan</span><u></u><u></u></p>
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<p class="MsoNormal"> <u></u><u></u></p>
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<p class="MsoNormal">On Thu, Oct 13, 2016 at 11:38 AM, Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>> wrote:<u></u><u></u></p>
<blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Dženan,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Just to confirm, when I configure in Cmake, I should turn OFF Build_Examples and Build_Testing, but turn ON Module_LesionSizingToolkit?</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Thanks,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Constance</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span><u></u><u></u></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Dženan Zukić [mailto:</span><a href="mailto:dzenanz@gmail.com" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">dzenanz@gmail.com</span></a><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">]
<br>
<b>Sent:</b> Thursday, October 13, 2016 10:29 AM<br>
<b>To:</b> Owens,Constance A <</span><a href="mailto:CAOwens@mdanderson.org" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">CAOwens@mdanderson.org</span></a><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">><br>
<b>Cc:</b> </span><a href="mailto:insight-users@itk.org" target="_blank"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">insight-users@itk.org</span></a><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><br>
<b>Subject:</b> Re: [ITK-users] Lesion Sizing Toolkit Build not successful</span><u></u><u></u></p>
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<div>
<p class="MsoNormal"> <u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Constance,</span><u></u><u></u></p>
</div>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">building it outside of ITK I also get similar errors, e.g.:</span><u></u><u></u></p>
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<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">5>C:\Misc\LesionSizingToolkit\<wbr>Utilities\Visualization\<wbr>IsoSurfaceVolumeEstimation.<wbr>cxx(21): fatal error C1083: Cannot open include file: 'vtkPolyDataWriter.h':
No such file or directory</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
</div>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">I will investigate later, and in the meantime you can try building it as part of ITK (turn Module_LesionSizingToolkit ON).</span><u></u><u></u></p>
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<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Regards,</span><u></u><u></u></p>
</div>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Dženan</span><u></u><u></u></p>
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<p class="MsoNormal"> <u></u><u></u></p>
<div>
<p class="MsoNormal">On Thu, Oct 13, 2016 at 11:20 AM, Dženan Zukić <<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>> wrote:<u></u><u></u></p>
<blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Hi Constance,</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">the lesion sizing toolkit builds with master version of ITK with examples and tests turned off. I will now try building with those
on to see if some problems appear. I used VS2013 x64.</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif"> </span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Regards,</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Verdana",sans-serif">Dženan</span><u></u><u></u></p>
</div>
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<div>
<p class="MsoNormal"> <u></u><u></u></p>
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<div>
<p class="MsoNormal">On Thu, Oct 13, 2016 at 10:48 AM, Owens,Constance A <<a href="mailto:CAOwens@mdanderson.org" target="_blank">CAOwens@mdanderson.org</a>> wrote:<u></u><u></u></p>
</div>
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<blockquote style="border:none;border-left:solid #cccccc 1.0pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0in;margin-bottom:5.0pt">
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<p class="MsoNormal">I was hoping to speak with someone who may be able to help me with installing and building Lesion Sizing Toolkit. Originally I tried to build LSTK with ITK v4.2.0 and VTK v7.0.0
but during the build process (I’m using Visual Studio 9 2008 64x), 6 projects fail with the following errors:<u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal">Error 1 fatal error C1083: Cannot open include file: '<wbr>itkLesionSegmentationImageFilt<wbr>er8.h': No such file or directory c:\itk2\src\modules\remote\<wbr>lesionsizingtoolkit\examples\<wbr>itkLesionSegmentationCommandLi<wbr>neProgressReporter.h <wbr>
22<u></u><u></u></p>
<p class="MsoNormal">Error 2 fatal error C1083: Cannot open include file: 'itkImageFileReader.h': No such file or directory c:\ITK2\src\Modules\Remote\<wbr>LesionSizingToolkit\Examples\<wbr>LesionSegmentation.cxx
1<u></u><u></u></p>
<p class="MsoNormal">Error 3 fatal error C1083: Cannot open include file: 'itkVector.h': No such file or directory c:\itk2\src\modules\remote\<wbr>lesionsizingtoolkit\utilities\<wbr>visualization\<wbr>vtkContourVisualizationModule.<wbr>h
22<u></u><u></u></p>
<p class="MsoNormal">Error 4 fatal error C1083: Cannot open include file: 'vtkPolyDataWriter.h': No such file or directory c:\ITK2\src\Modules\Remote\<wbr>LesionSizingToolkit\Utilities\<wbr>Visualization\<wbr>LesionSurfaceExtraction.cxx <wbr>
21<u></u><u></u></p>
<p class="MsoNormal">Error 5 fatal error C1083: Cannot open include file: 'vtkPolyDataWriter.h': No such file or directory c:\ITK2\src\Modules\Remote\<wbr>LesionSizingToolkit\Utilities\<wbr>Visualization\<wbr>IsoSurfaceVolumeEstimation.<wbr>cxx
21<u></u><u></u></p>
<p class="MsoNormal">Error 6 fatal error C1083: Cannot open include file: 'itkVector.h': No such file or directory c:\itk2\src\modules\remote\<wbr>lesionsizingtoolkit\utilities\<wbr>visualization\<wbr>vtkContourVisualizationModule.<wbr>h
22<u></u><u></u></p>
<p class="MsoNormal">Error 7 fatal error C1083: Cannot open include file: 'itkCommand.h': No such file or directory c:\ITK2\src\Modules\Remote\<wbr>LesionSizingToolkit\Utilities\<wbr>Visualization\<wbr>ViewImageAndSegmentationSurfac<wbr>e.cxx
18<u></u><u></u></p>
<p class="MsoNormal">Error 8 error C2039: 'MetaEvent' : is not a member of '`global namespace'' c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaEvent.h
35<u></u><u></u></p>
<p class="MsoNormal">Error 9 error C2499: 'itk::MetaEvent' : a class cannot be its own base class c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaEvent.h
35<u></u><u></u></p>
<p class="MsoNormal">Error 10 error C2146: syntax error : missing ';' before identifier 'MetaObjectType' <wbr> c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
55<u></u><u></u></p>
<p class="MsoNormal">Error 11 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
55<u></u><u></u></p>
<p class="MsoNormal">Error 12 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
55<u></u><u></u></p>
<p class="MsoNormal">Error 13 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
64<u></u><u></u></p>
<p class="MsoNormal">Error 14 error C2143: syntax error : missing ',' before '*' c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr> 64<u></u><u></u></p>
<p class="MsoNormal">Error 15 error C2143: syntax error : missing ';' before '*' c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr> 67<u></u><u></u></p>
<p class="MsoNormal">Error 16 error C2433: 'itk::MetaConverterBase<<wbr>VDimension>::MetaObjectType' : 'virtual' not permitted on data declarations c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
67<u></u><u></u></p>
<p class="MsoNormal">Error 17 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
67<u></u><u></u></p>
<p class="MsoNormal">Error 18 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
67<u></u><u></u></p>
<p class="MsoNormal">Error 20 error C2143: syntax error : missing ';' before '*' c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr> 77<u></u><u></u></p>
<p class="MsoNormal">Error 21 error C2433: 'itk::MetaConverterBase<<wbr>VDimension>::MetaObjectType' : 'virtual' not permitted on data declarations c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
77<u></u><u></u></p>
<p class="MsoNormal">Error 22 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
77<u></u><u></u></p>
<p class="MsoNormal">Error 23 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\itk2\src\modules\core\<wbr>spatialobjects\include\<wbr>itkMetaConverterBase.h <wbr>
77<u></u><u></u></p>
<p class="MsoNormal">Error 25 error C2143: syntax error : missing ';' before '*' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 100<u></u><u></u></p>
<p class="MsoNormal">Error 26 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h
100<u></u><u></u></p>
<p class="MsoNormal">Error 27 error C4430: missing type specifier - int assumed. Note: C++ does not support default-int C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h
102<u></u><u></u></p>
<p class="MsoNormal">Error 29 error C2061: syntax error : identifier 'MetaScene' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 104<u></u><u></u></p>
<p class="MsoNormal">Error 30 error C2065: 'MetaObject' : undeclared identifier C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 112<u></u><u></u></p>
<p class="MsoNormal">Error 31 error C2059: syntax error : '>' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 112<u></u><u></u></p>
<p class="MsoNormal">Error 32 error C2143: syntax error : missing ';' before '{' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 116<u></u><u></u></p>
<p class="MsoNormal">Error 33 error C2653: 'TConverter' : is not a class or namespace name C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 117<u></u><u></u></p>
<p class="MsoNormal">Error 34 error C2653: 'TConverter' : is not a class or namespace name C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 117<u></u><u></u></p>
<p class="MsoNormal">Error 35 error C2143: syntax error : missing ';' before '}' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 121<u></u><u></u></p>
<p class="MsoNormal">Error 36 error C2143: syntax error : missing ';' before '{' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 124<u></u><u></u></p>
<p class="MsoNormal">Error 37 error C2653: 'TConverter' : is not a class or namespace name C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 125<u></u><u></u></p>
<p class="MsoNormal">Error 38 error C2653: 'TConverter' : is not a class or namespace name C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 125<u></u><u></u></p>
<p class="MsoNormal">Error 39 error C2143: syntax error : missing ';' before '}' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 127<u></u><u></u></p>
<p class="MsoNormal">Error 40 error C2065: 'transform' : undeclared identifier C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 128<u></u><u></u></p>
<p class="MsoNormal">Error 41 error C2143: syntax error : missing ',' before ')' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 128<u></u><u></u></p>
<p class="MsoNormal">Error 42 error C2065: 'MetaObject' : undeclared identifier C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 130<u></u><u></u></p>
<p class="MsoNormal">Error 43 error C2065: 'obj' : undeclared identifier C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 130<u></u><u></u></p>
<p class="MsoNormal">Error 44 error C2143: syntax error : missing ',' before ')' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 130<u></u><u></u></p>
<p class="MsoNormal">Error 45 error C2143: syntax error : missing ';' before '}' C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 141<u></u><u></u></p>
<p class="MsoNormal">Error 46 fatal error C1004: unexpected end-of-file found C:\ITK2\src\Modules\Core\<wbr>SpatialObjects\include\<wbr>itkMetaSceneConverter.h 141<u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal">Additionally, I am using CMake v3.6.1.<u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal">I also tried to build it with VTK v5.10 and ITK v4.2 as suggested by the ITK Bar Camp document provided by this link:<u></u><u></u></p>
<p class="MsoNormal"><a href="http://insightsoftwareconsortium.github.io/ITKBarCamp-doc/ITK/LungNoduleSegmentationWithLSTK.html" target="_blank">http://<wbr>insightsoftwareconsortium.<wbr>github.io/ITKBarCamp-doc/ITK/<wbr>LungNoduleSegmentationWithLSTK<wbr>.html</a><u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal">However, cmake showed an error requesting a version of VTK 6.0.0 or newer. I will try this version in the meantime, but was hoping to get some help on building LSTK.<u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal"> <u></u><u></u></p>
<p class="MsoNormal"><span style="color:black">Thanks,</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">Constance Owens</span><u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">Graduate Research Assistant<br>
<br>
</span><b><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#404040">The University of Texas Graduate School of Biomedical Sciences at Houston</span></b><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#404040"><br>
Medical Physics</span><u></u><u></u></p>
<p class="MsoNormal"><a href="https://mailbox.mdanderson.org/owa/redir.aspx?REF=1_J6y-0UTLZALKHOYAqJgthiuCumt3SSyTDe5aCeIfM-m0qTq4TTCAFtYWlsdG86Q0FPd2Vuc0BtZGFuZGVyc29uLm9yZw.." target="_blank"><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#954f72">CAOwens@mdanderson.org</span></a><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#404040"><br>
tel 713-745-3679 | cel 281-770-5210</span><u></u><u></u></p>
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<p class="MsoNormal"> <u></u><u></u></p>
</div>
</div>
</div>
</div>
<div>
<div>
<p class="MsoNormal">The information contained in this e-mail message may be privileged, confidential, and/or protected from disclosure. This e-mail message may contain protected health information
(PHI); dissemination of PHI should comply with applicable federal and state laws. If you are not the intended recipient, or an authorized representative of the intended recipient, any further review, disclosure, use, dissemination, distribution, or copying
of this message or any attachment (or the information contained therein) is strictly prohibited. If you think that you have received this e-mail message in error, please notify the sender by return e-mail and delete all references to it and its contents from
your systems.<u></u><u></u></p>
</div>
</div>
</div>
</blockquote>
</div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
</div></div></div><div><div class="h5">
<p class="MsoNormal">The information contained in this e-mail message may be
privileged, confidential, and/or protected from disclosure. This e-mail message
may contain protected health information (PHI); dissemination of PHI should
comply with applicable federal and state laws. If you are not the intended recipient,
or an authorized representative of the intended recipient, any further review,
disclosure, use, dissemination, distribution, or copying of this message or any
attachment (or the information contained therein) is strictly prohibited. If
you think that you have received this e-mail message in error, please notify
the sender by return e-mail and delete all references to it and its contents
from your systems.<u></u><u></u></p></div></div></div>
</blockquote></div><br></div>