<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">The image you sent before is a 2D image, and you should do some 2D skull stripping (e.g. <a href="https://www.researchgate.net/publication/264042031_Skull_Stripping_of_MRI_Using_Clustering_and_2D_Region_Growing_Method">this</a>).</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Also, can you try to keep the conversation on the mailing list so other people can benefit from it in the future?</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Regards,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Dženan</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jul 18, 2016 at 10:23 AM, meikolin saimara <span dir="ltr"><<a href="mailto:kolin9105@gmail.com" target="_blank">kolin9105@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>thanks before sir,<br> I have read this before but I don't about dataset.<br></div>how about my image what I send before??<br></div>can you remove the skull??<br></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jul 18, 2016 at 9:02 PM, Dženan Zukić <span dir="ltr"><<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">There is a <a href="http://www.insight-journal.org/download/viewpdf/859/4/download" target="_blank">paper</a> which goes along with the source code, which give more description as well as how to call the filter.</div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jul 18, 2016 at 9:55 AM, meikolin saimara <span dir="ltr"><<a href="mailto:kolin9105@gmail.com" target="_blank">kolin9105@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div>I just have tried how to compile the code. I am confused how to use it. <br></div>but I have problem to use that because the skull stripping approaches need data sheet of brain.<br></div>I just want send one image in my thesis no more.<br></div>I am sorry sir I am beginner in ITK. <br><div><div><br></div></div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jul 18, 2016 at 8:02 PM, Dženan Zukić <span dir="ltr"><<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Have you tried some skull stripping approaches? One example is this:</div><div class="gmail_default"><font face="verdana, sans-serif"><a href="http://www.insight-journal.org/browse/publication/859" target="_blank">http://www.insight-journal.org/browse/publication/859</a></font><br></div><div class="gmail_default"><br></div><div class="gmail_default">Also, something similar to what you are trying to do already exists:</div><div class="gmail_default"><a href="http://volbrain.upv.es" target="_blank">http://volbrain.upv.es</a><br></div><div class="gmail_default"><br></div><div class="gmail_default">Regards</div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jul 18, 2016 at 4:34 AM, meikolin saimara <span dir="ltr"><<a href="mailto:kolin9105@gmail.com" target="_blank">kolin9105@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>oke I will explain to you what I want to do in my thesis.<br>in my thesis I want to build web service to analyze large of brain tumor.<br>the steps are client send one image of brain which one will be analyzed after that server will be processed the image without being noticed by client.<br>in server using command prompt to analyzed the image. after that the result will be showed to Client.<br><br>now my problem is I can't remove outside the skull with itk in my server.<br>if outside the skull Can't be removed so the itk program will enter pixel of the skull mixed the tumor. <br>first image is before processed and second image is after processed.<br></div>in confidence connected uses the seedX is 100 and the seedY 75.<br> <br><div><br><br><br><br> <br></div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jul 15, 2016 at 9:34 PM, Dženan Zukić <span dir="ltr"><<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Hi Meikolin,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">it is not clear to me what your problem is. Can you give some images (what you get, what you want, where you put the seeds) and explain a bit more what you did code-wise? Otherwise I would have to guess.</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Regards,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Dženan</div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jul 15, 2016 at 3:26 AM, meikolin saimara <span dir="ltr"><<a href="mailto:kolin9105@gmail.com" target="_blank">kolin9105@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div><div>thanks before sir..<br></div>I have one problem in my thesis.<br></div>I have a image of brain tumor,I can find the tumor and the skull using confidence connected segmentation, but I just wanna need the tumor no the skull. I just wanna one picture no full head to analyzed.<br></div>can you help me sir??<br></div>please sir..<br></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jul 15, 2016 at 3:54 AM, Dženan Zukić <span dir="ltr"><<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Hi Meikolin,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">there is no "advantage" to seeds, it is how confidence connected filter operates. It finds all voxels which are connected to the provided seeds with a certain confidence. So seeds are starting points.</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Regards,</div><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Dženan</div></div><div class="gmail_extra"><br><div class="gmail_quote"><span>On Thu, Jul 14, 2016 at 1:49 PM, meikolin saimara <span dir="ltr"><<a href="mailto:kolin9105@gmail.com" target="_blank">kolin9105@gmail.com</a>></span> wrote:<br></span><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span><div dir="ltr"><div>hello every one I am so confused until now I haven't find the correct answer about , what is the advantage seedX and seedY in confidence connected filter ???<br></div></div>
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