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Francois,
<div class=""><br class="">
</div>
<div class="">I think I merged the patch that fixes this earlier this morning.</div>
<div class=""><br class="">
</div>
<div class="">Hans</div>
<div class=""><br class="">
<div apple-content-edited="true" class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
========================================================================<br class="">
Hans J. Johnson, Ph.D., Associate Professor <br class="">
Electrical and Computer Engineering (Primary), Biomedical Engineering, Psychiatry <br class="">
<a href="mailto:hans-johnson@uiowa.edu" class="">hans-johnson@uiowa.edu</a> <br class="">
(319) 621 7185 (cell)<br class="">
(319) 384 3538 ECE Phone (Primary)<br class="">
(319) 353 8587 Psychiatry Phone (Secondary)<br class="">
<br class="">
4316 Seamans Center<br class="">
Iowa City, IA 52242</div>
</div>
<br class="">
<div>
<blockquote type="cite" class="">
<div class="">On Jul 9, 2015, at 11:22 AM, Francois Budin <<a href="mailto:fbudin@email.unc.edu" class="">fbudin@email.unc.edu</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">Hello everyone,<br class="">
<br class="">
I am trying to compile ITK4.8 with the following options:<br class="">
-DBUILD_TESTING:BOOL=ON \<br class="">
-DCMAKE_BUILD_TYPE:STRING=Release \<br class="">
-DBUILD_SHARED_LIBS:BOOL=ON \<br class="">
-DModule_ITKIODCMTK:BOOL=ON \<br class="">
-DModule_ITKIOPhilipsREC=ON \<br class="">
-DModule_ITKIOMINC=ON \<br class="">
-DModule_MGHIO:BOOL=ON \<br class="">
-DITKV3_COMPATIBILITY:BOOL=OFF \<br class="">
-DModule_ITKReview:BOOL=ON \<br class="">
-DVTK_DIR:PATH=${VTKConfigDIR} \<br class="">
-DModule_ITKVtkGlue:BOOL=ON<br class="">
<br class="">
<br class="">
I get the following error message when it tries to compile the examples:<br class="">
<br class="">
Linking CXX executable ../../bin/TransformReadWrite<br class="">
cd /tools/devel/linux/ITKv4/InsightToolkit-Auto-4.8.0-build/Examples/IO && /NIRAL/tools/CMake/cmake-3.1.0/bin/cmake -E cmake_link_script CMakeFiles/TransformReadWrite.dir/link.txt --verbose=1<br class="">
/usr/bin/c++ -Wall -Wno-long-double -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof
-Woverloaded-virtual -Wstrict-null-sentinel -msse2 -msse2 -O3 -DNDEBUG CMakeFiles/TransformReadWrite.dir/TransformReadWrite.cxx.o -o ../../bin/TransformReadWrite -rdynamic ../../lib/libITKIOLSM-4.8.so.1 ../../lib/libITKDICOMParser-4.8.so.1 ../../lib/libITKIOMesh-4.8.so.1
../../lib/libITKIOCSV-4.8.so.1 ../../lib/libITKIODCMTK-4.8.so.1 ../../lib/libITKIOHDF5-4.8.so.1 ../../Modules/ThirdParty/MINC/ITKMINC2_ExternalProject-build/libitk_minc2.a ../../lib/libITKIOMINC-4.8.so.1 ../../lib/libITKIOMRC-4.8.so.1 ../../lib/libITKIOPhilipsREC-4.8.so.1
../../lib/libITKOptimizersv4-4.8.so.1 ../../lib/libITKReview-4.8.so.1 ../../lib/libITKVideoIO-4.8.so.1 ../../lib/libITKVtkGlue-4.8.so.1 ../../lib/libitkMGHIO-4.8.so.1 ../../lib/libITKgiftiio-4.8.so.1 ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmdata.so
../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmimage.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmimgle.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmjpeg.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmjpls.so
../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmnet.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmpstat.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmqrdb.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmsr.so
../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmtls.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libijg12.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libijg16.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libijg8.so
../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/liboflog.so ../../Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib/libofstd.so ../../Modules/ThirdParty/MINC/ITKMINC2_ExternalProject-build/libitk_minc2.a ../../lib/libITKIOBMP-4.8.so.1 ../../lib/libITKIOBioRad-4.8.so.1
../../lib/libITKIOGDCM-4.8.so.1 ../../lib/libitkgdcmMSFF-4.8.so.1 ../../lib/libitkgdcmDICT-4.8.so.1 ../../lib/libitkgdcmIOD-4.8.so.1 ../../lib/libitkgdcmDSED-4.8.so.1 ../../lib/libitkgdcmCommon-4.8.so.1 ../../lib/libITKIOGIPL-4.8.so.1 ../../lib/libITKIOJPEG-4.8.so.1
../../lib/libITKIOTIFF-4.8.so.1 ../../lib/libitktiff-4.8.so.1 ../../lib/libitkjpeg-4.8.so.1 ../../lib/libITKIOMeta-4.8.so.1 ../../lib/libITKIONIFTI-4.8.so.1 ../../lib/libITKniftiio-4.8.so.1 ../../lib/libITKznz-4.8.so.1 ../../lib/libITKIONRRD-4.8.so.1 ../../lib/libITKNrrdIO-4.8.so.1
../../lib/libITKIOPNG-4.8.so.1 ../../lib/libitkpng-4.8.so.1 ../../lib/libITKIOStimulate-4.8.so.1 ../../lib/libITKIOVTK-4.8.so.1 ../../lib/libITKLabelMap-4.8.so.1 ../../lib/libITKQuadEdgeMesh-4.8.so.1 ../../lib/libITKBiasCorrection-4.8.so.1 ../../lib/libITKPolynomials-4.8.so.1
../../lib/libITKBioCell-4.8.so.1 ../../lib/libITKIOSpatialObjects-4.8.so.1 ../../lib/libITKIOXML-4.8.so.1 ../../lib/libITKEXPAT-4.8.so.1 ../../lib/libITKFEM-4.8.so.1 ../../lib/libITKMetaIO-4.8.so.1 ../../lib/libITKOptimizers-4.8.so.1 ../../lib/libITKIOSiemens-4.8.so.1
../../lib/libITKIOGE-4.8.so.1 ../../lib/libITKIOIPL-4.8.so.1 ../../lib/libITKIOTransformHDF5-4.8.so.1 ../../lib/libitkhdf5_cpp-4.8.so.1 ../../lib/libitkhdf5-4.8.so.1 ../../lib/libITKIOTransformInsightLegacy-4.8.so.1 ../../lib/libITKIOTransformMatlab-4.8.so.1
../../lib/libITKIOTransformBase-4.8.so.1 ../../lib/libITKKLMRegionGrowing-4.8.so.1 ../../lib/libITKWatersheds-4.8.so.1 ../../lib/libITKSpatialObjects-4.8.so.1 ../../lib/libITKMesh-4.8.so.1 ../../lib/libITKPath-4.8.so.1 ../../lib/libITKStatistics-4.8.so.1 ../../lib/libitkNetlibSlatec-4.8.so.1
../../lib/libitkopenjpeg-4.8.so.1 ../../lib/libITKVideoCore-4.8.so.1 ../../lib/libITKVTK-4.8.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkRenderingFreeTypeOpenGL-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkRenderingOpenGL-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkImagingHybrid-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkIOImage-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkDICOMParser-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkIOCore-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkmetaio-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkpng-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtktiff-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkjpeg-6.2.so.1 -lGLU -lSM -lICE -lX11 -lXext -lSM -lICE -lX11 -lXext -lXt /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkRenderingFreeType-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkftgl-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkfreetype-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkzlib-6.2.so.1
-lGL /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkInteractionStyle-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkRenderingCore-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonColor-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkFiltersGeometry-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkFiltersExtraction-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkFiltersStatistics-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkImagingFourier-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkalglib-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkFiltersSources-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkFiltersGeneral-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkFiltersCore-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonComputationalGeometry-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkImagingSources-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkImagingCore-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonExecutionModel-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonDataModel-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonMisc-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonSystem-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtksys-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonTransforms-6.2.so.1 /tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonMath-6.2.so.1
/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib/libvtkCommonCore-6.2.so.1 ../../lib/libITKIOImageBase-4.8.so.1 ../../lib/libITKCommon-4.8.so.1 ../../lib/libitkdouble-conversion-4.8.so.1 ../../lib/libitksys-4.8.so.1 ../../lib/libITKVNLInstantiation-4.8.so.1
../../lib/libitkvnl_algo-4.8.so.1 ../../lib/libitkv3p_lsqr-4.8.so.1 ../../lib/libitkvnl-4.8.so.1 ../../lib/libitkvcl-4.8.so.1 ../../lib/libitkv3p_netlib-4.8.so.1 -lm -lpthread -ldl -lm ../../lib/libitkzlib-4.8.so.1 -Wl,-rpath,/tools/devel/linux/ITKv4/InsightToolkit-Auto-4.8.0-build/lib:/tools/devel/linux/ITKv4/InsightToolkit-Auto-4.8.0-build/Modules/ThirdParty/DCMTK/ITKDCMTK_ExtProject-build/lib:/tools/VTK/VTK_6.2.0/VTK_6.2.0_linux64_dyn-Qt4.8.6-Python2.7.7_Release/lib
-Wl,-rpath-link,/tools/devel/linux/ITKv4/InsightToolkit-Auto-4.8.0-build/lib <br class="">
CMakeFiles/TransformReadWrite.dir/TransformReadWrite.cxx.o:(.data+0x10): undefined reference to `itk::MINCTransformIOFactoryRegister__Private()'<br class="">
collect2: ld returned 1 exit status<br class="">
make[3]: *** [bin/TransformReadWrite] Error 1<br class="">
<br class="">
<br class="">
I am attaching the itkTransformIOFactoryRegisterManager.h file generated automatically for TransformReadWrite. It tries to register MINCTransformIOFactoryRegister which makes sense because this transform IO is specified in the UseITK.cmake (also attached),
but I don't seem to have any library that corresponds to that in my ITK-build/lib directory.<br class="">
<br class="">
Is there an option I forgot to activate that is required for that? For now I am just going to deactivate the support of the MINC format, but I wanted to report my problem in case it is a bug in ITK.<br class="">
<br class="">
Francois<br class="">
<span id="cid:202A0FAD-4747-40F8-B495-3B194212B552"><itkTransformIOFactoryRegisterManager.h></span><span id="cid:3FAB9FBB-11AF-46B5-9436-62E0F4C54CB6"><UseITK.cmake></span>_____________________________________<br class="">
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</blockquote>
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<br class="">
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