<div dir="ltr">I didn't remove it. How exactly do I do that? Also, from which folder should i run the conda install --use-local simpleitk command. <div><br></div><div>I changed to conda recipes folder and issued the command. I got an error</div><div><br></div><div> conda install --use-local simpleitk</div>
<p class="">Fetching package metadata: ...Error: Could not find URL: file:///Users/dagarshali/anaconda/conda-bld/osx-64/</p></div><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Sep 13, 2014 at 12:00 PM, Bradley Lowekamp <span dir="ltr"><<a href="mailto:blowekamp@mail.nih.gov" target="_blank">blowekamp@mail.nih.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Did you remove the installed SimpleITK from the setup.py script before running "const install --use-local simpleitk". I am guessing conda didn't install simpleitk correctly because of the old version manually installed. <div><br></div><div>Brad<div><div class="h5"><br><div><div>On Sep 12, 2014, at 10:52 PM, Vishwa <<a href="mailto:vishwanath.somashekar@gmail.com" target="_blank">vishwanath.somashekar@gmail.com</a>> wrote:</div><br><blockquote type="cite"><div dir="ltr"><div class="gmail_extra"><span style="font-family:arial,sans-serif;font-size:13.333333969116211px">Hi Brad,</span><div style="font-family:arial,sans-serif;font-size:13.333333969116211px">Thanks for all the help. I tried the conda install --use-local simpleitk from the conda-recipes folder. It didn't seem to matter..</div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><br></div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px">Here is the thing that I noticed..</div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><br></div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px">If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then i can get it to work from the python that's invoked from the terminal. However, when I try the same thing from the notebook or from spyder, I get the following error.</div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><br></div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><span><div>>>import SimpleITK as sitk</div><div>Traceback (most recent call last):</div><div> File "<stdin>", line 1, in <module></div><div> File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py", line 1, in <module></div><div> from .SimpleITK import *</div><div> File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 28, in <module></div><div> _SimpleITK = swig_import_helper()</div><div> File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 24, in swig_import_helper</div><div> _mod = imp.load_module('_SimpleITK', fp, pathname, description)</div></span><div>ImportError: dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so, 2): Library not loaded: libpng15.15.dylib</div><span><div> Referenced from: /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so</div><div> Reason: image not found</div></span></div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><br></div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px">Any suggestions?</div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><br></div><div style="font-family:arial,sans-serif;font-size:13.333333969116211px"><br></div><div class="gmail_quote">On Fri, Sep 12, 2014 at 6:59 PM, Vishwa <span dir="ltr"><<a href="mailto:vishwanath.somashekar@gmail.com" target="_blank">vishwanath.somashekar@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi Brad,<div>Thanks for all the help. I tried the conda install --use-local simpleitk from the conda-recipes folder. It didn't seem to matter..</div><div><br></div><div>Here is the thing that I noticed..</div><div><br></div><div>If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then i can get it to work from the python that's invoked from the terminal. However, when I try the same thing from the notebook or from spyder, I get the following error.</div><div><br></div><div><span><div>>>import SimpleITK as sitk</div><div>Traceback (most recent call last):</div><div> File "<stdin>", line 1, in <module></div><div> File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py", line 1, in <module></div><div> from .SimpleITK import *</div><div> File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 28, in <module></div><div> _SimpleITK = swig_import_helper()</div><div> File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 24, in swig_import_helper</div><div> _mod = imp.load_module('_SimpleITK', fp, pathname, description)</div></span><div>ImportError: dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so, 2): Library not loaded: libpng15.15.dylib</div><span><div> Referenced from: /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so</div><div> Reason: image not found</div></span></div><div><br></div><div>Any suggestions?</div></div></blockquote></div><br><br></div></div>
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