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<body class='hmmessage'><div style="text-align: left;">Gaëtan,<br><br>What would be the best way of iterating over a 'label map' and fit each indivdual object to a know model (eg 2D Gaussian) and then adding the attributes of the fitting (eg the sigma of the Gaussian fit) to the corresponding object? I guess this could be a good extention of your binary attribute morphology classes.<br><br></div>> <br>> <br>> Le 15 oct. 07 à 16:25, Ali - a écrit :<br>> <br>> > Gaëtan,<br>> ><br>> > That include command solved the problem. Thank you.<br>> ><br>> <br>> Great :-)<br>> <br>> The changes are commited, and will be in the next revision to the <br>> insight journal.<br>> <br>> Gaëtan<br>> <br>> <br>> > ><br>> > ><br>> > > Hi Ali,<br>> > ><br>> > > Le 14 oct. 07 à 19:47, Ali - a écrit :<br>> > ><br>> > > > Gaëtan,<br>> > > ><br>> > > > I get these errors while compiling your IJ labeling classes with<br>> > > > python wrappers:<br>> > > ><br>> > > > Generating wrap_itkStatisticsOpeningLabelMapFilter.xml<br>> > > > In file included from E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/<br>> > > > binaryAttributeMorphology/itkLabelMapFilter.h:116,<br>> > > > from E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/<br>> > > > binaryAttributeMorphology/itkInPlaceLabelMapFilter.h:23,<br>> > > > from E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/<br>> > > > binaryAttributeMorphology/itkShapeOpeningLabelMapFilter.h:20,<br>> > > > from E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/<br>> > > > binaryAttributeMorphology/itkStatisticsOpeningLabelMapFilter.h:20,<br>> > > > from E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/build/<br>> > > > Wrapping/wrap_itkStatisticsOpeningLabelMapFilter.cxx:19:<br>> > > > E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/<br>> > > > binaryAttributeMorphology/itkLabelMapFilter.txx: In<br>> > > > member function `virtual void itk::LabelMapFilter<TInputImage,<br>> > > > TOutputImage>::BeforeThreadedGenerateData()':<br>> > > > E:/dev/itk/IJ/IJ-<br>> > > > Label_object_representation_and_manipulation_with_ITK.3/<br>> > > > binaryAttributeMorphology/itkLabelMapFilter.txx:88: error: syntax<br>> > > > error before `(' token<br>> > > > Project : error PRJ0019: A tool returned an error code from<br>> > > > "Generating wrap_itkStatisticsOpeningLabelMapFilter.xml"<br>> > > ><br>> > > > The tests compile fine though. Is this a known bug? It was <br>> > compiled<br>> > > > by VS.net 8 SP1.<br>> > > ><br>> > ><br>> > > That's not a known bug.<br>> > > I think I have forgotten to include itkProgressReporter.h. Can you<br>> > > add the line:<br>> > ><br>> > > #include "itkProgressReporter.h"<br>> > ><br>> > > line 23 in itkLabelMapFilter.h", and tell me if it works ?<br>> > ><br>> > > Thanks for your patience,<br>> > ><br>> > > Gaëtan<br>> > ><br>> > ><br>> > ><br>> > > > ><br>> > > > > Le 11 oct. 07 à 17:25, Ali - a écrit :<br>> > > > ><br>> > > > > > Gaëtan,<br>> > > > > ><br>> > > > > > Are your labeling classes included in ITK cvs version?<br>> > > > ><br>> > > > > not yet<br>> > > > ><br>> > > > > > Any plans to include them in near future?<br>> > > > ><br>> > > > > that contribution is made to be included in ITK, but, I can't <br>> > say<br>> > > > > when it will be effectively included.<br>> > > > > Anyway, you can use it already if you like :-)<br>> > > > ><br>> > > > > Gaëtan<br>> > > > ><br>> > > > > ><br>> > > > > > ><br>> > > > > > ><br>> > > > > > > Hi Ali,<br>> > > > > > ><br>> > > > > > > Please look at the contribution I made recently : http://<br>> > > > insight-<br>> > > > > > > journal.org/InsightJournalManager/view_reviews.php?<br>> > > > > > > back=index.php&pubid=176<br>> > > > > > > I'm using it extensively currently, with WrapITK.<br>> > > > > > ><br>> > > > > > > Gaëtan<br>> > > > > > ><br>> > > > > > ><br>> > > > > > > Le 11 oct. 07 à 16:18, Ali - a écrit :<br>> > > > > > ><br>> > > > > > > > Hi,<br>> > > > > > > ><br>> > > > > > > > How is it possible to have a watershed-output-like for the<br>> > > > output<br>> > > > > > > > of a binary threshold filter, that is, how to access the<br>> > > > > > individual<br>> > > > > > > > regoins of the output of a binary threshold filter for <br>> > further<br>> > > > > > > > manipulation?<br>> > > > > > > ><br>> > > > > > > > The next generation of MSN Hotmail has arrived - <br>> > Windows Live<br>> > > > > > Hotmail<br>> > > > > > > > _______________________________________________<br>> > > > > > > > Insight-users mailing list<br>> > > > > > > > Insight-users@itk.org<br>> > > > > > > > http://www.itk.org/mailman/listinfo/insight-users<br>> > > > > > ><br>> > > > > > > --<br>> > > > > > > Gaëtan Lehmann<br>> > > > > > > Biologie du Développement et de la Reproduction<br>> > > > > > > INRA de Jouy-en-Josas (France)<br>> > > > > > > tel: +33 1 34 65 29 66 fax: 01 34 65 29 09<br>> > > > > > > http://voxel.jouy.inra.fr<br>> > > > > > ><br>> > > > > > ><br>> > > > > > ><br>> > > > > ><br>> > > > > > Get free emoticon packs and customisation from Windows <br>> > Live. Pimp<br>> > > > > > My Live!<br>> > > > ><br>> > > > > --<br>> > > > > Gaëtan Lehmann<br>> > > > > Biologie du Développement et de la Reproduction<br>> > > > > INRA de Jouy-en-Josas (France)<br>> > > > > tel: +33 1 34 65 29 66 fax: 01 34 65 29 09<br>> > > > > http://voxel.jouy.inra.fr<br>> > > > ><br>> > > > ><br>> > > > ><br>> > > ><br>> > > > Play Movie Mash-up and win BIG prizes!<br>> > ><br>> > > --<br>> > > Gaëtan Lehmann<br>> > > Biologie du Développement et de la Reproduction<br>> > > INRA de Jouy-en-Josas (France)<br>> > > tel: +33 1 34 65 29 66 fax: 01 34 65 29 09<br>> > > http://voxel.jouy.inra.fr<br>> > ><br>> > ><br>> > ><br>> ><br>> > Do you know a place like the back of your hand? Share local <br>> > knowledge with BackOfMyHand.com<br>> <br>> --<br>> Gaëtan Lehmann<br>> Biologie du Développement et de la Reproduction<br>> INRA de Jouy-en-Josas (France)<br>> tel: +33 1 34 65 29 66 fax: 01 34 65 29 09<br>> http://voxel.jouy.inra.fr<br>> <br>> <br>> <br><br /><hr />The next generation of MSN Hotmail has arrived - <a href='http://www.newhotmail.co.uk' target='_new'>Windows Live Hotmail</a></body>
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