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<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Hello all,<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>In my application, I’m trying to transform the same
image (<i><span style='font-style:italic'>unionMask</span></i>) multiple times,
each time with a different set of parameters (previously collected), and write
the result to file.<i><span style='font-style:italic'> </span></i>The fixed
image is saved fine, but the loop just generates multiple copies of the same
transformed image. The cout’s show that the parameters of invTransform do
change in every iteration, so I’m suspecting that the pipeline doesn’t
get updated after the first iteration for some reason. As you can see, I tried
performing an Update() after updating every filter, but the result is the same.
I’d appreciate if someone could point me to whatever step I’m
missing...<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Thanks,<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Allon Shahar<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>----------------------------------------------------------------------------------------------------<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>The filters are using are all versions of the common ITK
filters:<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
color=blue face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New";
color:blue'>typedef</span></font><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
itk::ResampleImageFilter<InImageType, InImageType >
ResampleFilterType;<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> ResampleFilterType::Pointer
resampler = ResampleFilterType::New();<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New"'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
color=blue face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New";
color:blue'>typedef</span></font><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
itk::ThresholdImageFilter< InImageType > ThreshFilterType;<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New"'>ThreshFilterType::Pointer
thresher = ThreshFilterType::New();<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New"'>CastFilterType::Pointer
caster = CastFilterType::New();<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> <o:p></o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
color=blue face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New";
color:blue'>typedef</span></font><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> itk::ImageFileWriter<
OutImageType > WriterType;<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-indent:.5in;text-autospace:none'><font size=2
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New"'>WriterType::Pointer
writer = WriterType::New();<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span style='font-size:10.0pt;
font-family:"Courier New"'> <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face="Courier New"><span style='font-size:10.0pt;
font-family:"Courier New"'>----------------------------------------------------</span></font><font
size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>The problematic pipeline code is:<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 color=green
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New";
color:green'> // Write the union mask to the reference file.<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
writer->SetFileName( fixedPrefix+outMaskSuffix );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> caster->SetInput(
unionMask );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> writer->SetInput(
caster->GetOutput() );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> writer->Update();<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> <font color=green><span
style='color:green'>// Inverse transform to the individual test's plane.<o:p></o:p></span></font></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
resampler->SetInput( unionMask );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> <font color=blue><span
style='color:blue'>for</span></font> ( i=0; i<numTests; i++ )<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> { <o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<font color=blue><span style='color:blue'>for</span></font> ( j=0; j<numParams;
j++ ) finalParameters[j] = collectParameters[i*numParams+j];<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
transform->SetParameters( finalParameters ); <o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
movingPrefix = argv[i+2];<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
transform->GetInverse( invTransform );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
matrix = invTransform->GetMatrix();<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
offset = invTransform->GetOffset();<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
std::cout << "Inverse Matrix = " << std::endl <<
matrix << std::endl;<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
std::cout << "Inverse Offset = " << std::endl <<
offset << std::endl;<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
resampler->SetTransform( invTransform );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<font color=green><span style='color:green'>//resampler->Update();<o:p></o:p></span></font></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
thresher->SetInput( resampler->GetOutput() ); <o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<font color=green><span style='color:green'>//thresher->Update();<o:p></o:p></span></font></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
caster->SetInput( thresher->GetOutput() );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<font color=green><span style='color:green'>//caster->Update();<o:p></o:p></span></font></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 color=green
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New";
color:green'><o:p> </o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
<font color=green><span style='color:green'>//Write to file<o:p></o:p></span></font></span></font></p>
<p class=MsoNormal style='margin-left:.5in;text-autospace:none'><font size=2
face="Courier New"><span style='font-size:10.0pt;font-family:"Courier New"'>
writer->SetFileName( movingPrefix+outMaskSuffix );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
writer->SetInput( caster->GetOutput() );<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'>
writer->Update();<o:p></o:p></span></font></p>
<p class=MsoNormal style='text-autospace:none'><font size=2 face="Courier New"><span
style='font-size:10.0pt;font-family:"Courier New"'> }<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
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