[ITK-users] Fwd: using simpleITK with anaconda python distribution

[Vishwa]

Hi Brad,
Thanks for all the help. I tried the conda install --use-local simpleitk
from the conda-recipes folder. It didn't seem to matter..

Here is the thing that I noticed..

If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then i
can get it to work from the python that's invoked from the terminal.
However, when I try the same thing from the notebook or from spyder, I get
the following error.

>>import SimpleITK as sitk
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File
"/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py",
line 1, in <module>
    from .SimpleITK import *
  File
"/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
line 28, in <module>
    _SimpleITK = swig_import_helper()
  File
"/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
line 24, in swig_import_helper
    _mod = imp.load_module('_SimpleITK', fp, pathname, description)
ImportError:
dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so,
2): Library not loaded: libpng15.15.dylib
  Referenced from:
/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so
  Reason: image not found

Any suggestions?


On Fri, Sep 12, 2014 at 6:59 PM, Vishwa <vishwanath.somashekar at gmail.com>
wrote:

> Hi Brad,
> Thanks for all the help. I tried the conda install --use-local simpleitk
> from the conda-recipes folder. It didn't seem to matter..
>
> Here is the thing that I noticed..
>
> If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then i
> can get it to work from the python that's invoked from the terminal.
> However, when I try the same thing from the notebook or from spyder, I get
> the following error.
>
> >>import SimpleITK as sitk
> Traceback (most recent call last):
>   File "<stdin>", line 1, in <module>
>   File
> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py",
> line 1, in <module>
>     from .SimpleITK import *
>   File
> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
> line 28, in <module>
>     _SimpleITK = swig_import_helper()
>   File
> "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py",
> line 24, in swig_import_helper
>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
> ImportError:
> dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so,
> 2): Library not loaded: libpng15.15.dylib
>   Referenced from:
> /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so
>   Reason: image not found
>
> Any suggestions?
>
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