[Insight-users] Questions about ITK4

Arnaud Gelas arnaud_gelas at hms.harvard.edu
Fri Sep 30 09:14:30 EDT 2011


Hi Hui,

Sorry, there was a typo in my previous email :-/...

Here you go:

     $ git checkout -t origin/v4.0b01

Here are the *.h you are looking for

$ find . | grep itkBinaryImageToWhitakerSparseLevelSetAdaptor.h
./Modules/Segmentation/LevelSetsv4/include/itkBinaryImageToWhitakerSparseLevelSetAdaptor.hxx
./Modules/Segmentation/LevelSetsv4/include/itkBinaryImageToWhitakerSparseLevelSetAdaptor.h

To be able to use the LevelSetsv4, you should either build ITK with all 
modules, or explicitly turn on the LevelSetsv4 one (which is part of the 
Segmentation group).

Please keep the conversation on the mailing list, other users may have 
the same problem.

Best,
Arnaud

On 09/30/2011 09:06 AM, Hui Tang wrote:
> Dear Arnaud,
> Thanks for your help.  I still can not find 
> itkBinaryImageToWhitakerSparseLevelSetAdaptor.h in v4.0b1.
> git shows the version number, so it should be right.....
> Best,
> Hui
> On Thu, Sep 29, 2011 at 7:05 PM, Hui Tang <tanghui.seu at gmail.com 
> <mailto:tanghui.seu at gmail.com>> wrote:
>
>     Hi arnaud thanks a loooooot for this! I will try, I will let you
>     know how it works:) best hui
>
>     Op 29 sep. 2011 18:55 schreef "Gelas, Arnaud Joel Florent"
>     <Arnaud_Gelas at hms.harvard.edu
>     <mailto:Arnaud_Gelas at hms.harvard.edu>> het volgende:
>
>     > Hi Hui Tang,
>     >
>     > I am really happy to see you are interested and are testing the
>     new level set infrastructure!
>     >
>     > If you get this error, I can only assume that you are now using
>     the git master version of ITK, this file has been remove recently
>     from the repository...
>     > I would strongly recommend to stick to ITK tags, since API keeps
>     on changing all around the place in the toolkit.
>     >
>     > Here is how you'd get the last tagged version:
>     >
>     > $ git fetch --all
>     > $ git checkout -t origin/v4.0b1
>     >
>     > With this version, you should be able to find
>     itkBinaryImageToWhitakerSparseLevelSetAdaptor.h
>     >
>     > If you are more adventurous, and want to be part of the
>     development, you can use master, but expect API / files / class
>     name to change.
>     > You can also create a gerrit account to review patches
>     (instructions are on the wiki). Note that all contributions /
>     inputs on this effort are welcome!!
>     >
>     > Now regarding your question, this is really easy to make it
>     happened in the v4 infrastructure. You have two possibilities:
>     >
>     > 1- grab the code from iternal or external term (depending on
>     your case); copy the code; you modify and remove the part in which
>     the mean gets updated.
>     > and you add itkSetMacro to set the mean at the beginning.
>     >
>     > 2- you inherit, might need to change some method to virtual (if
>     needed, let me know that'd be easy to fix).
>     >
>     > If you need more details on how to proceed for 1 or 2, just let
>     me know, we can definitively give you some more details on how to
>     proceed.
>     >
>     > Thanks,
>     >
>     > Best,
>     > Arnaud
>     >
>     > ________________________________________
>     > From: Hui Tang [tanghui.seu at gmail.com
>     <mailto:tanghui.seu at gmail.com>]
>     > Sent: Thursday, September 29, 2011 12:20 PM
>     > To: Gelas, Arnaud Joel Florent
>     > Subject: Questions about ITK4
>     >
>     > Dear Arnaud,
>     >
>     > How are you?
>     > I am using ITK4, but this headfile
>     "itkBinaryImageToWhitakerSparseLevelSetAdaptor.h" can not be found
>     in ITK4. Did I do anything wrong?
>     > And maybe you could help me with another question:) in chanvase
>     model, if my I would like to have a fixed average intensity ("c1")
>     for the foreground how can I implement that using ITK4?
>     >
>     > Thanks so much.
>     >
>     > Looking forward to your reply.
>     >
>     > Best,
>     >
>     > Hui Tang
>
>

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