[Insight-users] problem with orientation of dicom output from segmentation
John Drozd
john.drozd at gmail.com
Tue Dec 1 11:16:38 EST 2009
Thanks Andriy,
With BUILD_TYPE set to DEBUG, gdb no longer complains about "no debug
symbols".
It just complains about:
Missing separate debuginfos, use: debuginfo-install
e2fsprogs-libs-1.41.4-6.fc10.x86_64 glibc-2.9-3.x86_64 libgcc-4.3.2-7.x86_64
libstdc++-4.3.2-7.x86_64
Thanks,
john
On Mon, Nov 30, 2009 at 6:46 PM, Andriy Fedorov <fedorov at bwh.harvard.edu>wrote:
> > I ended up using the statementy in my CMakeLists.txt file:
> > SET (CMAKE_CXX_FLAGS_DEBUG "-DDEBUG -ggdb" CACHE STRING "Flags used by
> the
> > compiler during debug builds." FORCE)
> >
>
> John, I thought you should be able to configure debug flags by setting
> BUILD_TYPE to DEBUG in ccmake interface.
>
>
> > Here is the debugger output. I will try to figure out the problem as to
> why
> > my code is segmentation faulting, but I thought I would send you the gdb
> > debugger output, in case you have some insight:
> >
> > thanks,
> > john
> >
> > [jdrozd at trumpet ConnectedThresholdImageFilter2]$ gdb
> > ./ConnectedThresholdImageFilter
> >
> > GNU gdb Fedora
> > (6.8-32.fc10)
> >
> > Copyright (C) 2008 Free Software Foundation,
> > Inc.
> >
> > License GPLv3+: GNU GPL version 3 or later
> > <http://gnu.org/licenses/gpl.html>
> >
> > This is free software: you are free to change and redistribute
> > it.
> >
> > There is NO WARRANTY, to the extent permitted by law. Type "show
> > copying"
> >
> > and "show warranty" for
> > details.
> >
> > This GDB was configured as
> > "x86_64-redhat-linux-gnu"...
> >
> > (no debugging symbols
> > found)
> >
> > (gdb) set args correctedsubject5.dcm outsubject5.dcm 103 142 95 17100
> > 17300
> >
> > (gdb)
> > run
> >
> > Starting program:
> >
> /trumpet/downloads/ConnectedThresholdImageFilter_Plugin/ConnectedThresholdImageFilter/ConnectedThresholdImageFilter2/ConnectedThresholdImageFilter
> > correctedsubject5.dcm outsubject5.dcm 103 142 95 17100
> > 17300
> >
> > (no debugging symbols
> > found)
> >
> > (no debugging symbols found)
> > [Thread debugging using libthread_db enabled]
> > [New Thread 0x7ffff3b8c750 (LWP 24704)]
> >
> > Program received signal SIGSEGV, Segmentation fault.
> > 0x00007ffff50efa3a in std::_Rb_tree<std::string, std::pair<std::string
> > const, itk::SmartPointer<itk::MetaDataObjectBase> >,
> > std::_Select1st<std::pair<std::string const,
> > itk::SmartPointer<itk::MetaDataObjectBase> > >, std::less<std::string>,
> > std::allocator<std::pair<std::string const,
> > itk::SmartPointer<itk::MetaDataObjectBase> > > >::begin (this=0x0) at
> >
> /usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../include/c++/4.3.2/bits/stl_tree.h:599
> > 599 (this->_M_impl._M_header._M_left));
> > Current language: auto; currently c++
> > Missing separate debuginfos, use: debuginfo-install
> > e2fsprogs-libs-1.41.4-6.fc10.x86_64 glibc-2.9-3.x86_64
> libgcc-4.3.2-7.x86_64
> > libstdc++-4.3.2-7.x86_64
> > (gdb) where
> > #0 0x00007ffff50efa3a in std::_Rb_tree<std::string,
> std::pair<std::string
> > const, itk::SmartPointer<itk::MetaDataObjectBase> >,
> > std::_Select1st<std::pair<std::string const,
> > itk::SmartPointer<itk::MetaDataObjectBase> > >, std::less<std::string>,
> > std::allocator<std::pair<std::string const,
> > itk::SmartPointer<itk::MetaDataObjectBase> > > >::begin (this=0x0) at
> >
> /usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../include/c++/4.3.2/bits/stl_tree.h:599
> > #1 0x00007ffff50efa65 in std::map<std::string,
> > itk::SmartPointer<itk::MetaDataObjectBase>, std::less<std::string>,
> > std::allocator<std::pair<std::string const,
> > itk::SmartPointer<itk::MetaDataObjectBase> > > >::begin (this=0x0)
> > at
> >
> /usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../include/c++/4.3.2/bits/stl_map.h:276
> > #2 0x00007ffff50ef0b6 in itk::MetaDataDictionary::Begin (this=0x791a60)
> > at
> >
> /trumpet/downloads/3DSlicerNov302009/Slicer3-lib/Insight/Code/Common/itkMetaDataDictionary.cxx:108
> > #3 0x00007ffff7caaab7 in itk::GDCMImageIO::Write (this=0x7fffffffd130,
> > buffer=0x791110)
> > at
> >
> /trumpet/downloads/3DSlicerNov302009/Slicer3-lib/Insight/Code/IO/itkGDCMImageIO.cxx:1338
> > #4 0x000000000047e461 in itk::ImageFileReader<itk::Image<short, 3u>,
> > itk::DefaultConvertPixelTraits<short> >::EnlargeOutputRequestedRegion ()
> > #5 0x00007ffff502f0e0 in itk::ProcessObject::PropagateRequestedRegion
> > (this=0x784260, output=0x788630)
> > at
> >
> /trumpet/downloads/3DSlicerNov302009/Slicer3-lib/Insight/Code/Common/itkProcessObject.cxx:783
> > #6 0x00007ffff4ff667b in itk::DataObject::PropagateRequestedRegion
> > (this=0x788630)
> > at
> >
> /trumpet/downloads/3DSlicerNov302009/Slicer3-lib/Insight/Code/Common/itkDataObject.cxx:389
> > #7 0x00007ffff4ff49e0 in itk::DataObject::Update (this=0x788630)
> > at
> >
> /trumpet/downloads/3DSlicerNov302009/Slicer3-lib/Insight/Code/Common/itkDataObject.cxx:343
> > #8 0x00007ffff502f3ef in itk::ProcessObject::Update (this=0x784260)
> > at
> >
> /trumpet/downloads/3DSlicerNov302009/Slicer3-lib/Insight/Code/Common/itkProcessObject.cxx:615
> > #9 0x000000000043fd3d in main ()
> > (gdb)
> >
> >
> > On Mon, Nov 30, 2009 at 2:56 PM, John Drozd <john.drozd at gmail.com>
> wrote:
> >
> >> Hi Bill,
> >>
> >> I installed the nightly build of 3D Slicer which includes Itk 3.16.
> >>
> >> As you suggested I tried to compile my code with Itk 3.16, to see if the
> >> "upside down" problem prevailed, but a new bigger problem exists for me
> with
> >> using Itk 3.16.
> >>
> >> I am perplexed that using Itk 3.16, my code segmenation faults when I
> >> invoke reader->Update(),
> >> for a dicom series or a dicom volume, whereas previously with itk 3.14
> it
> >> worked just fine.
> >>
> >> I am currently trying to figure out how to set the "-g" compiler option
> for
> >> the CMakeLists.txt file so I can run the gdb debugger on it to find out
> >> where it segmentation faults.
> >>
> >> I tried the command:
> >> set (CMAKE_CXX_FLAGS_DEBUG_INIT "-g")
> >> but so far that has not worked.
> >>
> >> john
> >>
> >> On Fri, Nov 27, 2009 at 4:48 PM, Bill Lorensen <bill.lorensen at gmail.com
> >wrote:
> >>
> >>> John,
> >>>
> >>> Actually, Mathieu reported in response that updating to 3.16 may help.
> >>> Can you try this first?
> >>>
> >>> Bill
> >>>
> >>> On Fri, Nov 27, 2009 at 12:42 PM, John Drozd <john.drozd at gmail.com>
> >>> wrote:
> >>> > Hi again,
> >>> >
> >>> > I was at home and I just figured out how to provide you this link to
> my
> >>> data
> >>> > remotely,
> >>> > so I provide it now instead of on the weekend:
> >>> >
> >>> > Here is a link to my data (3D dicom volume):
> >>> >
> >>> > input volume for my ConnectedThresholdFilter code:
> >>> > http://www.apmaths.uwo.ca/~jdrozd/correctedsubject5.dcm<http://www.apmaths.uwo.ca/%7Ejdrozd/correctedsubject5.dcm>
> <http://www.apmaths.uwo.ca/%7Ejdrozd/correctedsubject5.dcm>
> >>> >
> >>> > output volume from my ConnectedThresholdFilter code:
> >>> > http://www.apmaths.uwo.ca/~jdrozd/outsubject5.dcm<http://www.apmaths.uwo.ca/%7Ejdrozd/outsubject5.dcm>
> <http://www.apmaths.uwo.ca/%7Ejdrozd/outsubject5.dcm>
> >>> >
> >>> > If you need my CMakeLists.txt file, just let me know.
> >>> >
> >>> > to run the code type:
> >>> > ./ConnectedThresholdImageFilter correctedsubject5.dcm outsubject5.dcm
> >>> 103
> >>> > 142 95 17100 17300
> >>> > and here is my code below:
> >>> >
> >>> >
> >>> >
> >>> > Below is my uncommented code:
> >>> > /*
> >>> > to run type:
> >>> > ./ConnectedThresholdImageFilter correctedsubject5.dcm outsubject5.dcm
> >>> 103
> >>> > 142 95 17100 17300
> >>> > */
> >>> > #if defined(_MSC_VER)
> >>> > #pragma warning ( disable : 4786 )
> >>> > #endif
> >>> > #ifdef __BORLANDC__
> >>> > #define ITK_LEAN_AND_MEAN
> >>> > #endif
> >>> > #include "itkConnectedThresholdImageFilter.h"
> >>> > #include "itkImage.h"
> >>> > #include "itkCastImageFilter.h"
> >>> > #include "itkCurvatureFlowImageFilter.h"
> >>> > #include "itkImageFileReader.h"
> >>> > #include "itkImageFileWriter.h"
> >>> > #include "itkGDCMImageIO.h"
> >>> > #include "itkVersion.h"
> >>> > #include "itkOrientedImage.h"
> >>> > #include "itkMinimumMaximumImageFilter.h"
> >>> > #include "itkGDCMImageIO.h"
> >>> > #include "itkGDCMSeriesFileNames.h"
> >>> > #include "itkNumericSeriesFileNames.h"
> >>> > #include "itkImageSeriesReader.h"
> >>> > #include "itkImageSeriesWriter.h"
> >>> > #include "itkResampleImageFilter.h"
> >>> > #include "itkShiftScaleImageFilter.h"
> >>> > #include "itkIdentityTransform.h"
> >>> > #include "itkLinearInterpolateImageFunction.h"
> >>> > #include <itksys/SystemTools.hxx>
> >>> > #include "gdcm/src/gdcmFile.h"
> >>> > #include "gdcm/src/gdcmUtil.h"
> >>> > #include <string>
> >>> > int main( int argc, char *argv[])
> >>> > {
> >>> > if( argc < 7 )
> >>> > {
> >>> > std::cerr << "Missing Parameters " << std::endl;
> >>> > std::cerr << "Usage: " << argv[0];
> >>> > std::cerr << " inputImage outputImage seedX seedY seedZ
> >>> lowerThreshold
> >>> > upperThreshold" << std::endl;
> >>> > return 1;
> >>> > }
> >>> > typedef float InternalPixelType;
> >>> >
> >>> > const unsigned int Dimension = 3;
> >>> > typedef itk::Image< InternalPixelType, Dimension >
> InternalImageType;
> >>> > typedef signed short OutputPixelType;
> >>> > typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
> >>> > typedef itk::Image< float, Dimension > OutputImageType2;
> >>> > typedef itk::CastImageFilter< InternalImageType, OutputImageType >
> >>> > CastingFilterType;
> >>> > CastingFilterType::Pointer caster = CastingFilterType::New();
> >>> >
> >>> > const unsigned int ImageDimension = 3;
> >>> > typedef signed short PixelType;
> >>> > typedef itk::Image< PixelType, ImageDimension > FixedImageType;
> >>> > typedef itk::Image< float, ImageDimension > FloatImageType;
> >>> > typedef itk::ImageFileReader< FixedImageType > ReaderType;
> >>> > typedef itk::ImageFileWriter< OutputImageType > WriterType;
> >>> > typedef itk::ImageFileWriter< FloatImageType > WriterType2;
> >>> > ReaderType::Pointer reader = ReaderType::New();
> >>> > WriterType::Pointer writer = WriterType::New();
> >>> > WriterType2::Pointer writer2 = WriterType2::New();
> >>> > typedef itk::GDCMImageIO ImageIOTypefixed;
> >>> > ImageIOTypefixed::Pointer gdcmImageIOfixed =
> ImageIOTypefixed::New();
> >>> > reader->SetImageIO( gdcmImageIOfixed );
> >>> > typedef itk::GDCMImageIO ImageIOTypefixed2;
> >>> > ImageIOTypefixed2::Pointer gdcmImageIOfixed2 =
> >>> ImageIOTypefixed2::New();
> >>> > reader->SetFileName( argv[1] );
> >>> > reader->Update();
> >>> > typedef itk::CurvatureFlowImageFilter< InternalImageType,
> >>> > InternalImageType >
> >>> > CurvatureFlowImageFilterType;
> >>> >
> >>> > CurvatureFlowImageFilterType::Pointer smoothing =
> >>> > CurvatureFlowImageFilterType::New();
> >>> > typedef itk::ConnectedThresholdImageFilter< InternalImageType,
> >>> > InternalImageType >
> >>> ConnectedFilterType;
> >>> > ConnectedFilterType::Pointer connectedThreshold =
> >>> > ConnectedFilterType::New();
> >>> > typedef signed short InputAPixelType;
> >>> > typedef float OutputBPixelType;
> >>> > typedef itk::Image< InputAPixelType, 3 > InputAImageType;
> >>> > typedef itk::Image< OutputBPixelType, 3 > OutputBImageType;
> >>> > typedef itk::CastImageFilter< InputAImageType, OutputBImageType >
> >>> > CastFilterType;
> >>> > CastFilterType::Pointer castFilter = CastFilterType::New();
> >>> > castFilter->SetInput( reader->GetOutput() );
> >>> >
> >>> > connectedThreshold->SetInput( castFilter->GetOutput() );
> >>> > caster->SetInput( connectedThreshold->GetOutput() );
> >>> > smoothing->SetNumberOfIterations( 20 ); //was 5
> >>> > smoothing->SetTimeStep( 0.125 );
> >>> >
> >>> > const InternalPixelType lowerThreshold = atof( argv[6] );
> >>> > const InternalPixelType upperThreshold = atof( argv[7] );
> >>> >
> >>> > connectedThreshold->SetLower( lowerThreshold );
> >>> > connectedThreshold->SetUpper( upperThreshold );
> >>> >
> >>> > connectedThreshold->SetReplaceValue( 255 );
> >>> > InternalImageType::IndexType index;
> >>> >
> >>> > index[0] = atoi( argv[3] );
> >>> > index[1] = atoi( argv[4] );
> >>> >
> >>> > //added
> >>> > index[2] = atoi( argv[5] );
> >>> > std::cout << index << std::endl;
> >>> > // Software Guide : BeginCodeSnippet
> >>> > connectedThreshold->SetSeed( index );
> >>> >
> >>> > //obtain a 5 x 5 bounding region of seeds
> >>> > int ii, jj, kk;
> >>> > ii = index[0];
> >>> > jj = index[1];
> >>> > kk = index[2];
> >>> > for (int i = ii; i < ii + 5; i++)
> >>> > for (int j = jj; j < jj + 5; j++)
> >>> > for (int k = kk; k < kk + 5; k++)
> >>> > {
> >>> >
> >>> > index[0] = i;
> >>> > index[1] = j;
> >>> > index[2] = k;
> >>> > connectedThreshold->AddSeed( index );
> >>> > }
> >>> > for (int i = ii; i > ii - 5; i--)
> >>> > for (int j = jj; j > jj - 5; j--)
> >>> > for (int k = kk; k > kk - 5; k--)
> >>> > {
> >>> >
> >>> > index[0] = i;
> >>> > index[1] = j;
> >>> > index[2] = k;
> >>> > connectedThreshold->AddSeed( index );
> >>> > }
> >>> > connectedThreshold->Print(std::cout,17100);
> >>> >
> >>> > typedef itk::MetaDataDictionary DictionaryType;
> >>> >
> >>> > DictionaryType inputdict = reader->GetMetaDataDictionary();
> >>> >
> >>> > writer->SetMetaDataDictionary( inputdict );
> >>> >
> >>> > writer->SetFileName( argv[2] );
> >>> >
> >>> > writer->SetInput( caster->GetOutput() );
> >>> > try
> >>> > {
> >>> > writer->Update();
> >>> > }
> >>> > catch( itk::ExceptionObject & excep )
> >>> > {
> >>> > std::cerr << "Exception caught !" << std::endl;
> >>> > std::cerr << excep << std::endl;
> >>> > }
> >>> > return 0;
> >>> > On Fri, Nov 27, 2009 at 12:31 PM, John Drozd <john.drozd at gmail.com>
> >>> wrote:
> >>> >>
> >>> >> Hi all,
> >>> >>
> >>> >> I originally have a dicom series of 2d slices which I had converted
> to
> >>> a
> >>> >> 3D dicom volume for processing.
> >>> >> I'll try processing the dicom series and then write the output to a
> >>> dicom
> >>> >> series of 2d slices, to see if I can circumvent this problem.
> >>> >> I'll let you know if this works?
> >>> >>
> >>> >> I'll provide a link to my data as well, but it probably won't be
> until
> >>> the
> >>> >> weekend.
> >>> >>
> >>> >> Thanks,
> >>> >> john
> >>> >>
> >>> >> On Fri, Nov 27, 2009 at 12:23 PM, Mathieu Malaterre
> >>> >> <mathieu.malaterre at gmail.com> wrote:
> >>> >>>
> >>> >>> This is a post ITK 3.16 feature I am afraid:
> >>> >>>
> >>> >>> http://www.cmake.org/Bug/view.php?id=7748
> >>> >>>
> >>> >>> (0017626)
> >>> >>> Mathieu.Malaterre (developer)
> >>> >>> 2009-09-19 06:51
> >>> >>>
> >>> >>> This will be post ITK 3.16.
> >>> >>>
> >>> >>> Thanks for the patch ! Sorry for being so long to fix it.
> >>> >>>
> >>> >>> On Fri, Nov 27, 2009 at 6:11 PM, Bill Lorensen <
> >>> bill.lorensen at gmail.com>
> >>> >>> wrote:
> >>> >>> > John,
> >>> >>> >
> >>> >>> > 3.16 will not help. This looks like a bug for sure.
> >>> >>> >
> >>> >>> > Can you provide a link to a dataset that we can use to reproduce
> the
> >>> >>> > problem? We don't have much experience with 3D dicom files I'm
> >>> afraid.
> >>> >>> >
> >>> >>> > Bill
> >>> >>> >
> >>> >>> > On Fri, Nov 27, 2009 at 11:59 AM, John Drozd <
> john.drozd at gmail.com>
> >>> >>> > wrote:
> >>> >>> >> Hi Bill,
> >>> >>> >>
> >>> >>> >> I am currently using the ITK 3.14 that is in the 3D Slicer 3.4
> >>> >>> >> directory Slicer3-lib/Insight
> >>> >>> >>
> >>> >>> >> If I upgrade to ITK 3.16, will this solve my problem?
> >>> >>> >>
> >>> >>> >> I downloaded ITK 3.16 and noticed using the diff command that
> >>> >>> >> itkGDCMIO.h has been modified from what it was in ITK 3.14.
> >>> >>> >>
> >>> >>> >> But when I ran diff on gdcmOrientation.cxx in both versions of
> ITK,
> >>> >>> >> diff showed no difference.
> >>> >>> >>
> >>> >>> >> John
> >>> >>> >>
> >>> >>> >> On Friday, November 27, 2009, Bill Lorensen <
> >>> bill.lorensen at gmail.com>
> >>> >>> >> wrote:
> >>> >>> >>> John,
> >>> >>> >>>
> >>> >>> >>> What version of itk are you using? Are you using the gdcm 1.x
> that
> >>> is
> >>> >>> >>> in the itk source tree or an external gdcm 2.x version?
> >>> >>> >>>
> >>> >>> >>> Bill
> >>> >>> >>>
> >>> >>> >>> On Thu, Nov 26, 2009 at 3:22 PM, John Drozd <
> john.drozd at gmail.com
> >>> >
> >>> >>> >>> wrote:
> >>> >>> >>>> Hi Luis,
> >>> >>> >>>>
> >>> >>> >>>> I was getting a segmentation fault because I had forgotten to
> >>> change
> >>> >>> >>>> the
> >>> >>> >>>> Dimension from 2 to 3 in DicomReadPrintTag.cxx.
> >>> >>> >>>>
> >>> >>> >>>> For the input image, I have:
> >>> >>> >>>> (0020|0037) Image Orientation (Patient) =
> >>> 0.0\0.0\-1.0\0.0\1.0\0.0
> >>> >>> >>>>
> >>> >>> >>>> For the output image, I have:
> >>> >>> >>>> (0020|0037) Image Orientation (Patient) =
> >>> >>> >>>> 0.000000\0.000000\1.000000\0.000000\1.000000\0.000000
> >>> >>> >>>>
> >>> >>> >>>> There is a difference. Since the program is changing the
> >>> >>> >>>> orientation when
> >>> >>> >>>> processed through the pipeline, is the best approach to
> manually
> >>> >>> >>>> change the
> >>> >>> >>>> orientation tag of the dictionary and then copy the revised
> >>> >>> >>>> dictionary to
> >>> >>> >>>> the output file?
> >>> >>> >>>>
> >>> >>> >>>> john
> >>> >>> >>>>
> >>> >>> >>>> Below are the full tags:
> >>> >>> >>>>
> >>> >>> >>>> [jdrozd at trumpet DicomImageReadPrintTags]$
> >>> ./DicomImageReadPrintTags
> >>> >>> >>>> correctedsubject5.dcm
> >>> >>> >>>> (0002|0000) Group Length =
> >>> >>> >>>> 214
> >>> >>> >>>> (0002|0001) File Meta Information Version =
> >>> >>> >>>> AAE=
> >>> >>> >>>> (0002|0002) Media Storage SOP Class UID =
> >>> >>> >>>> 1.2.840.10008.5.1.4.1.1.2
> >>> >>> >>>> (0002|0003) Media Storage SOP Instance UID =
> >>> >>> >>>>
> 1.2.826.0.1.3680043.2.1125.1.10607669833050788267094246636093811
> >>> >>> >>>> (0002|0010) Transfer Syntax UID =
> >>> >>> >>>> 1.2.840.10008.1.2.1
> >>> >>> >>>> (0002|0012) Implementation Class UID =
> >>> >>> >>>> 147.144.143.155
> >>> >>> >>>> (0002|0013) Implementation Version Name = ITK/GDCM
> >>> >>> >>>> 1.2.4
> >>> >>> >>>> (0002|0016) Source Application Entity Title =
> >>> >>> >>>> NOTSPECIFIED
> >>> >>> >>>> (0008|0008) Image Type =
> >>> >>> >>>> DERIVED\PRIMARY
> >>> >>> >>>> (0008|0012) Instance Creation Date =
> >>> >>> >>>> 20091029
> >>> >>> >>>> (0008|0013) Instance Creation Time =
> >>> >>> >>>> 135224
> >>> >>> >>>> (0008|0016) SOP Class UID =
> >>> >>> >>>> 1.2.840.10008.5.1.4.1.1.2
> >>> >>> >>>> (0008|0018) SOP Instance UID =
> >>> >>> >>>>
> 1.2.826.0.1.3680043.2.1125.1.10607669833050788267094246636093811
> >>> >>> >>>> (0008|0020) Study Date =
> >>> >>> >>>> 20081030
> >>> >>> >>>> (0008|0030) Study Time =
> >>> >>> >>>> 164348.940
> >>> >>> >>>> (0008|0050) Accession Number
> >>> >>> >>>> =
> >>> >>> >>>> (0008|0060) Modality =
> >>> >>> >>>> CT
> >>> >>> >>>> (0008|0064) Conversion Type =
> >>> >>> >>>> WSD
> >>> >>> >>>> (0008|0070) Manufacturer =
> >>> >>> >>>> Manifacturer
> >>> >>> >>>> (0008|0080) Institution Name = GDCM
> >>> >>> >>>> Hospital
> >>> >>> >>>> (0008|0090) Referring Physician's Name = Refering
> >>> >>> >>>> Phisician
> >>> >>> >>>> (0010|0010) Patient's Name = Patient
> >>> >>> >>>> 188858520
> >>> >>> >>>> (0010|0020) Patient ID =
> >>> >>> >>>> 1747233212
> >>> >>> >>>> (0010|0030) Patient's Birth Date =
> >>> >>> >>>> 19500101
> >>> >>> >>>> (0010|0040) Patient's Sex =
> >>> >>> >>>> M
> >>> >>> >>>> (0018|0088) Spacing Between Slices =
> >>> >>> >>>> 1.207500
> >>> >>> >>>> (0018|1164) Imager Pixel Spacing =
> >>> >>> >>>> 0.945750\0.945750
> >>> >>> >>>> (0020|000d) Study Instance UID =
> >>> >>> >>>>
> 1.2.826.0.1.3680043.2.1125.1.53653479342656887425609263146205769
> >>> >>> >>>> (0020|000e) Series Instance UID =
> >>> >>> >>>>
> 1.2.826.0.1.3680043.2.1125.1.47155241092896696198844159625679986
> >>> >>> >>>> (0020|0010) Study ID =
> >>> >>> >>>> 1533117581
> >>> >>> >>>> (0020|0011) Series Number =
> >>> >>> >>>> 2135500125
> >>> >>> >>>> (0020|0013) Instance Number =
> >>> >>> >>>> 165
> >>> >>> >>>> (0020|0020) Patient Orientation =
> >>> >>> >>>> L\P
> >>> >>> >>>> (0020|0032) Image Position (Patient) =
> >>> >>> >>>> 199.237496852874\0.0\0.0
> >>> >>> >>>> (0020|0037) Image Orientation (Patient) =
> >>> >>> >>>> 0.0\0.0\-1.0\0.0\1.0\0.0
> >>> >>> >>>> (0020|4000) Image Comments = NOT FOR CLINICAL
> >>> >>> >>>> USE
> >>> >>> >>>> (0028|0002) Samples per Pixel =
> >>> >>> >>>> 1
> >>> >>> >>>> (0028|0004) Photometric Interpretation =
> >>> >>> >>>> MONOCHROME2
> >>> >>> >>>> (0028|0008) Number of Frames =
> >>> >>> >>>> 166
> >>> >>> >>>> (0028|0010) Rows =
> >>> >>> >>>> 256
> >>> >>> >>>> (0028|0011) Columns =
> >>> >>> >>>> 256
> >>> >>> >>>> (0028|0030) Pixel Spacing =
> >>> >>> >>>> 0.945750\0.945750
> >>> >>> >>>> (0028|0034) Pixel Aspect Ratio =
> >>> >>> >>>> 1\1
> >>> >>> >>>> (0028|0100) Bits Allocated =
> >>> >>> >>>> 16
> >>> >>> >>>> (0028|0101) Bits Stored =
> >>> >>> >>>> 16
> >>> >>> >>>> (0028|0102) High Bit =
> >>> >>> >>>> 15
> >>> >>> >>>> (0028|0103) Pixel Representation =
> >>> >>> >>>> 0
> >>> >>> >>>> (0028|1052) Rescale Intercept =
> >>> >>> >>>> 0.0
> >>> >>> >>>> (0028|1053) Rescale Slope =
> >>> >>> >>>> 1.0
> >>> >>> >>>> (0028|1054) Rescale Type =
> >>> >>> >>>> US
> >>> >>> >>>> (7fe0|0000) Group Length =
> >>> >>> >>>> 21757964
> >>> >>> >>>> Patient's Name (0010|0010) is: Patient
> >>> >>> >>>> 188858520
> >>> >>> >>>> Performing Physician's Name (0008|1050): (No Value Found in
> >>> >>> >>>> File)
> >>> >>> >>>> PixelType:
> >>> >>> >>>> scalar
> >>> >>> >>>> Component Type: unsigned_short
> >>> >>> >>>>
> >>> >>> >>>> [jdrozd at trumpet DicomImageReadPrintTags]$
> >>> ./DicomImageReadPrintTags
> >>> >>> >>>> outsubject5.dcm
> >>> >>> >>>> (0002|0000) Group Length =
> >>> >>> >>>> 194
> >>> >>> >>>> (0002|00
> >>> >>> >>
> >>> >>> > _____________________________________
> >>> >>> > Powered by www.kitware.com
> >>> >>> >
> >>> >>> > Visit other Kitware open-source projects at
> >>> >>> > http://www.kitware.com/opensource/opensource.html
> >>> >>> >
> >>> >>> > Kitware offers ITK Training Courses, for more information visit:
> >>> >>> > http://www.kitware.com/products/protraining.html
> >>> >>> >
> >>> >>> > Please keep messages on-topic and check the ITK FAQ at:
> >>> >>> > http://www.itk.org/Wiki/ITK_FAQ
> >>> >>> >
> >>> >>> > Follow this link to subscribe/unsubscribe:
> >>> >>> > http://www.itk.org/mailman/listinfo/insight-users
> >>> >>> >
> >>> >>>
> >>> >>>
> >>> >>>
> >>> >>> --
> >>> >>> Mathieu
> >>> >>
> >>> >
> >>> >
> >>>
> >>
> >>
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> > ------------------------------
> >
> > _______________________________________________
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> > Insight-users at itk.org
> > http://www.itk.org/mailman/listinfo/insight-users
> >
> >
> > End of Insight-users Digest, Vol 67, Issue 178
> > **********************************************
> >
>
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