[Insight-users] Help: compile errors on solaris

Luis Ibanez luis.ibanez at kitware.com
Sat Jun 9 20:05:36 EDT 2007 

Hi Zhu,

Thanks for checking the versions of your compilers.

They look fine.

Could you please do the same for the "make" tool ?

Try the command


    which make

and then use the resulting executable to request


    make --version


The purpose of the test here is to eliminate the
possibility that you may be mixing the Sun make
utility with the GNU one "gmake".


  Please let us know what you find.


     Thanks


        Luis



------------------------------------
Zhu, Yaoyao (NIH/NLM/LHC) [C] wrote:
> Hi, Luis,
> 
> Here are what I found:
> 
> c++ (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
> gcc (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
> 
> Thanks,
> 
> Yaoyao
> 
> 
> -----Original Message-----
> From: Luis Ibanez [mailto:luis.ibanez at kitware.com] 
> Sent: Wednesday, June 06, 2007 6:02 PM
> To: Zhu, Yaoyao (NIH/NLM/LHC) [C]
> Cc: insight-users at itk.org
> Subject: Re: [Insight-users] Help: compile errors on solaris
> 
> 
> 
> Hi Zhu,
> 
> Can you please verify if they are both the GNU compiler ?
> 
> and if they both correspond to the same version of the
> compiler.
> 
> 
> Try the commands:
> 
> 
>      /usr/sfw/bin/c++ --version
> 
> and
> 
>      /usr/sfw/bin/gcc --version
> 
> 
> and let us know what you get.
> 
> 
> We are trying to rule out the possibility that you may
> be mixing the GNU and the native Solaris compilers and
> or linkers.
> 
> 
>     Thanks
> 
> 
>        Luis
> 
> 
> 
> --------------------------------------
> Zhu, Yaoyao (NIH/NLM/LHC) [C] wrote:
> 
>>Hi, Luis,
>>
>>Thanks for your reply. 
>>
>>CXX: /usr/sfw/bin/c++
>>C: /usr/sfw/bin/gcc
>>
>>I switched off "BUILD_TESTING" and now the errors are 
>>
>>
>>Linking CXX executable ../../bin/DeformableRegistration4
>>Undefined                       first referenced
>> symbol                             in file
>>vnl_unary_function<double, vnl_vector<double> >::get_range_min()
>>
> 
> const/home/zhuyao/software/itkbuild/bin/libITKNumerics.a(itkSingleValued
> 
>>VnlCostFunctionAdaptor.o)
>>vnl_unary_function<double, vnl_vector<double> >::get_range_max()
>>
> 
> const/home/zhuyao/software/itkbuild/bin/libITKNumerics.a(itkSingleValued
> 
>>VnlCostFunctionAdaptor.o)
>>ld: fatal: Symbol referencing errors. No output written to
>>../../bin/DeformableRegistration4
>>collect2: ld returned 1 exit status
>>*** Error code 1
>>The following command caused the error:
>>cd /home/zhuyao/software/itkbuild/Examples/Registration &&
>>/usr/sfw/bin/c++      -ftemplate-depth-50 -D_PTHREADS  -fPIC
>>"CMakeFiles/DeformableRegistration4.dir/DeformableRegistration4.o"
> 
> -o
> 
>>../../bin/DeformableRegistration4  -L.
>>-L/home/zhuyao/software/itkbuild/bin -Wl,-Bstatic -lITKNumerics
> 
> -lITKIO
> 
>>-lITKNrrdIO -litkgdcm -litkjpeg12 -litkjpeg16 -litkopenjpeg
>>-Wl,-Bdynamic -lsocket -lnsl -Wl,-Bstatic -litkpng -litktiff
> 
> -litkjpeg8
> 
>>-lITKSpatialObject -lITKNumerics -lITKCommon -litkvnl_inst
> 
> -litkvnl_algo
> 
>>-litkv3p_netlib -litkvnl -litkvcl -Wl,-Bdynamic -lm -lthread
>>-Wl,-Bstatic -lITKMetaIO -litksys -Wl,-Bdynamic -ldl -Wl,-Bstatic
>>-lITKDICOMParser -lITKEXPAT -lITKniftiio -lITKznz -litkzlib
>>-Wl,-Bdynamic -lm -Wl,-R.:/home/zhuyao/software/itkbuild/bin 
>>make: Fatal error: Command failed for target
>>`bin/DeformableRegistration4'
>>Current working directory /home/zhuyao/software/itkbuild
>>*** Error code 1
>>The following command caused the error:
>>make -f
>>
> 
> Examples/Registration/CMakeFiles/DeformableRegistration4.dir/build.make
> 
>>Examples/Registration/CMakeFiles/DeformableRegistration4.dir/build
>>make: Fatal error: Command failed for target
>>`Examples/Registration/CMakeFiles/DeformableRegistration4.dir/all'
>>Current working directory /home/zhuyao/software/itkbuild
>>*** Error code 1
>>The following command caused the error:
>>make -f CMakeFiles/Makefile2 all
>>make: Fatal error: Command failed for target `all'
>>
>>------------------------
>>The followings are my settings in CMakeCache.txt:
>>
>>-----------------------
>>
>>//Name of build on the dashboard
>>BUILDNAME:STRING=SunOS-c++
>> 
>>//Build source documentation using doxygen
>>BUILD_DOXYGEN:BOOL=OFF
>> 
>>//Build the Examples directory.
>>BUILD_EXAMPLES:BOOL=ON
>> 
>>//Build ITK with shared libraries.
>>BUILD_SHARED_LIBS:BOOL=OFF
>> 
>>//Build the testing tree.
>>BUILD_TESTING:BOOL=OFF
>> 
>>//Path to a program.
>>CMAKE_AR:FILEPATH=/usr/ccs/bin/ar
>> 
>>//For backwards compatibility, what version of CMake commands and
>>// syntax should this version of CMake allow.
>>CMAKE_BACKWARDS_COMPATIBILITY:STRING=2.4
>> 
>>//Choose the type of build, options are: None(CMAKE_CXX_FLAGS or
>>// CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel.
>>//
>>CMAKE_BUILD_TYPE:STRING=
>> 
>>//Enable/Disable color output during build.
>>CMAKE_COLOR_MAKEFILE:BOOL=ON
>> 
>>//CXX compiler.
>>CMAKE_CXX_COMPILER:FILEPATH=/usr/sfw/bin/c++
>>
>>//Flags used by the compiler during all build types.
>>CMAKE_CXX_FLAGS:STRING=' '
>> 
>>//Flags used by the compiler during debug builds.
>>CMAKE_CXX_FLAGS_DEBUG:STRING=-g 
>> 
>>//Flags used by the compiler during release minsize builds. 
>>CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG 
>>   
>>//Flags used by the compiler during release builds (/MD /Ob1 /Oi
>>// /Ot /Oy /Gs will produce slightly less optimized but smaller
>>// files). 
>>CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
>> 
>>//Flags used by the compiler during Release with Debug Info builds.
>>// 
>>CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g
>>
>>//C compiler. 
>>CMAKE_C_COMPILER:FILEPATH=/usr/sfw/bin/gcc
>> 
>>//Flags for C compiler. 
>>CMAKE_C_FLAGS:STRING=' '
>> 
>>//Flags used by the compiler during debug builds.
>>CMAKE_C_FLAGS_DEBUG:STRING=-g
>> 
>>//Flags used by the compiler during release minsize builds. 
>>CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
>> 
>>//Flags used by the compiler during release builds (/MD /Ob1 /Oi
>>// /Ot /Oy /Gs will produce slightly less optimized but smaller 
>>// files).
>>CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG   
>>
>>
>>
>>-----Original Message-----
>>From: Luis Ibanez [mailto:luis.ibanez at kitware.com] 
>>Sent: Wednesday, June 06, 2007 4:54 PM
>>To: Zhu, Yaoyao (NIH/NLM/LHC) [C]
>>Cc: insight-users at itk.org
>>Subject: Re: [Insight-users] Help: compile errors on solaris
>>
>>
>>Hi Zhu,
>>
>>What values do you have in the environment variables CC and CXX ?
>>
>>Please let us know,
>>
>>
>>   Thanks
>>
>>
>>     Luis
>>
>>
>>=====================================
>>Zhu, Yaoyao (NIH/NLM/LHC) [C] wrote:
>>
>>
>>>Hi,
>>>
>>>
>>>
>>>I am compiling ITK on Solaris (SunOS whistler 5.10 Generic_125100-08
>>
>>sun4u sparc SUNW,Sun-Fire-280R ), configured with gcc/g++ (version
>>3.4.3), and I have the 
>>
>>
>>>following errors:
>>>
>>>
>>>
>>>[ 41%] Building CXX object 
>>>
>>
>>
> Utilities/vxl/core/vnl/tests/CMakeFiles/vnl_basic_operation_timings.dir/
> 
>>basic_operation_timings.o
>>
>>
>>>Linking CXX executable ../../../../../bin/vnl_basic_operation_timings
>>>
>>>Undefined                       first referenced
>>>
>>>symbol                             in file
>>>
>>>vnl_unary_function<double, vnl_vector<double> >::get_range_min() 
>>>const/home/zhuyao/software/itkbuild/bin/libitkvnl.so
>>>
>>>vnl_unary_function<double, vnl_vector<double> >::get_range_max() 
>>>const/home/zhuyao/software/itkbuild/bin/libitkvnl.so
>>>
>>>ld: fatal: Symbol referencing errors. No output written to 
>>>../../../../../bin/vnl_basic_operation_timings
>>>
>>>collect2: ld returned 1 exit status
>>>
>>>*** Error code 1
>>>
>>>The following command caused the error:
>>>
>>>cd /home/zhuyao/software/itkbuild/Utilities/vxl/core/vnl/tests && 
>>>/usr/sfw/bin/c++      -ftemplate-depth-50 -D_PTHREADS  -fPIC   
>>>"CMakeFiles/vnl_basic_operation_timings.dir/basic_operation_timings.o"
>>
>>
>>>-o ../../../../../bin/vnl_basic_operation_timings  -L. 
>>>-L/home/zhuyao/software/itkbuild/bin -litkvnl -litkvcl -lm 
>>>-Wl,-R.:/home/zhuyao/software/itkbuild/bin
>>>
>>>make: Fatal error: Command failed for target 
>>>`bin/vnl_basic_operation_timings'
>>>
>>>Current working directory /home/zhuyao/software/itkbuild
>>>
>>>*** Error code 1
>>>
>>>The following command caused the error:
>>>
>>>make -f 
>>>
>>
>>
> Utilities/vxl/core/vnl/tests/CMakeFiles/vnl_basic_operation_timings.dir/
> 
>>build.make 
>>
>>
> 
> Utilities/vxl/core/vnl/tests/CMakeFiles/vnl_basic_operation_timings.dir/
> 
>>build
>>
>>
>>>make: Fatal error: Command failed for target 
>>>
>>
>>
> `Utilities/vxl/core/vnl/tests/CMakeFiles/vnl_basic_operation_timings.dir
> 
>>/all'
>>
>>
>>>Current working directory /home/zhuyao/software/itkbuild
>>>
>>>*** Error code 1
>>>
>>>The following command caused the error:
>>>
>>>make -f CMakeFiles/Makefile2 all
>>>
>>>make: Fatal error: Command failed for target `all'
>>>
>>>
>>>
>>>
>>>
>>>Can anybody help?
>>>
>>>
>>>
>>>Thanks in advance,
>>>
>>>
>>>
>>>Yaoyao
>>>
>>>
>>>
>>>
>>>
>>
>>
> ------------------------------------------------------------------------
> 
>>>_______________________________________________
>>>Insight-users mailing list
>>>Insight-users at itk.org
>>>http://www.itk.org/mailman/listinfo/insight-users
>>
>>
>

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