[Insight-users] Help with ITK 2.4.1 and cmake 2.2.3.

[George Iordanescu]

Hi, 

I am reposting this question, maybe somebody can help me.

I updated my ITK libraries (from 2.00 to 2.4.1) and Cmake (from 1.8.3 to
2.2.3) and I have these errors when building my apps that I was able to
build previously without problems.

Any help will be HIGHLY appresiated.

Thank you.

George

[giordanescu at hp6000 buildtest]$ ccmake ../../


[giordanescu at hp6000 buildtest]$ make
Scanning dependencies of target CmrRegistration
Building CXX object
Auxiliary/Registration/CMakeFiles/CmrRegistration.dir/CmrRegistration.o
Building CXX object
Auxiliary/Registration/CMakeFiles/CmrRegistration.dir/FemRegistrator.o
Building CXX object
Auxiliary/Registration/CMakeFiles/CmrRegistration.dir/FemParametersFileGenerator.o
/home/giordanescu/cmr/apps/ITKApp/Auxiliary/Registration/FemParametersFileGenerator.cxx:51:24: warning: multi-line string literals are deprecated
Linking CXX static library libCmrRegistration.a
Generating fltkClippingPlane3DDrawerGUI.cxx
Generating fltkDisplayGlWindowGUI.cxx
Generating fltkDisplayGlWindowFlatGUI.cxx
Generating fltkFrustumFunctionControlGUI.cxx
Generating fltkImageViewerGUI.cxx
Generating fltkImage2DViewerGUI.cxx
Generating fltkRGBImage2DViewerGUI.cxx
Generating fltkRegularStepGradientDescentGUI.cxx
Generating fltkSlice2DDrawerGUI.cxx
Generating fltkSlice3DDrawerGUI.cxx
Generating fltkSphereFunctionControlGUI.cxx
Generating fltkTimeProbesCollectorGUI.cxx
Scanning dependencies of target ITKFltkImageViewer
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkBox3D.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkCone3D.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkClippingPlane3DDrawer.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkCylinder3D.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkFrustum3D.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkGlWindow.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkGlWindowInteractive.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkGlWindowInteractiveFlat.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkImage2DViewerWindow.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkRGBImage2DViewerWindow.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkLightButton.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkProgressBar.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkShape3D.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSphere3D.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkWindowInteractive.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkTimeProbeGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkTimeProbesCollector.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkUtils.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkClippingPlane3DDrawerGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkDisplayGlWindowGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkDisplayGlWindowFlatGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkFrustumFunctionControlGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkImageViewerGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkImage2DViewerGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkRGBImage2DViewerGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkRegularStepGradientDescentGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSlice2DDrawerGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSlice3DDrawerGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSphereFunctionControlGUI.o
Building CXX object
Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkTimeProbesCollectorGUI.o
Linking CXX static library libITKFltkImageViewer.a
Scanning dependencies of target Logger
Building CXX object Auxiliary/Logger/CMakeFiles/Logger.dir/Exception.o
Building CXX object Auxiliary/Logger/CMakeFiles/Logger.dir/LogMsg.o
Linking CXX static library libLogger.a
Scanning dependencies of target FMRI
Building CXX object
Auxiliary/FMRI/CMakeFiles/FMRI.dir/ActivationMapComputer.o
Building CXX object
Auxiliary/FMRI/CMakeFiles/FMRI.dir/MRIDataSimulator.o
Linking CXX static library libFMRI.a
Scanning dependencies of target DataManagement
Building CXX object
Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/DataManager.o
Building CXX object
Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/MetaHeaderCreator.o
Building CXX object
Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/complexFieldReader.o
Building CXX object
Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/fieldReader.o
Linking CXX static library libDataManagement.a
Generating guiMain.cxx
Scanning dependencies of target
LandmarkInitializedMutualInformationRegistration
Building CXX object
LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/guiMainImplementation.o
/home/giordanescu/cmr/apps/ITKApp/LandmarkInitializedMutualInformationRegistration/guiMainImplementation.cxx: In
   member function `void
guiMainImplementation::Register_PerVolume(int)':
/home/giordanescu/cmr/apps/ITKApp/LandmarkInitializedMutualInformationRegistration/guiMainImplementation.cxx:1713: warning: decimal
   constant is so large that it is unsigned
Building CXX object
LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/LandmarkRegistrator.o
Building CXX object
LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/main.o
Building CXX object
LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/CommandIterationUpdate.o
Building CXX object
LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/guiMain.o
Linking CXX executable LandmarkInitializedMutualInformationRegistration
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics23DenseFrequencyContainer3NewEv+0x7f): In function `itk::Statistics::DenseFrequencyContainer::New()':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::DenseFrequencyContainer()'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZNK3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE12GetFrequencyERKm+0x1f): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::GetFrequency(unsigned long const&) const':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::GetFrequency(unsigned long)
const'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE10InitializeERKNS_4SizeILj2EEE+0x14d): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::Initialize(itk::Size<2u> const&)':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::Initialize(unsigned long)'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE17IncreaseFrequencyERKmf+0x22): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::IncreaseFrequency(unsigned long const&, float)':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::IncreaseFrequency(unsigned
long, float)'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE12SetFrequencyERKmf+0x22): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::SetFrequency(unsigned long const&, float)':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::SetFrequency(unsigned long,
float)'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE9SetToZeroEv+0x1a): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::SetToZero()':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::SetToZero()'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk13ObjectFactoryINS_10Statistics23DenseFrequencyContainerEE6CreateEv+0x11): In function `itk::ObjectFactory<itk::Statistics::DenseFrequencyContainer>::Create()':
: undefined reference to `typeinfo for
itk::Statistics::DenseFrequencyContainer'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk13ObjectFactoryINS_10Statistics23DenseFrequencyContainerEE6CreateEv+0x51): In function `itk::ObjectFactory<itk::Statistics::DenseFrequencyContainer>::Create()':
: undefined reference to `typeinfo for
itk::Statistics::DenseFrequencyContainer'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZNK3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE12GetFrequencyERKm+0x1f): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::GetFrequency(unsigned long const&) const':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::GetFrequency(unsigned long)
const'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE10InitializeERKNS_4SizeILj1EEE+0x147): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::Initialize(itk::Size<1u> const&)':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::Initialize(unsigned long)'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE9SetToZeroEv+0x1a): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::SetToZero()':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::SetToZero()'
/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE17IncreaseFrequencyERKmf+0x22): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::IncreaseFrequency(unsigned long const&, float)':
: undefined reference to
`itk::Statistics::DenseFrequencyContainer::IncreaseFrequency(unsigned
long, float)'
collect2: ld returned 1 exit status
make[2]: ***
[LandmarkInitializedMutualInformationRegistration/LandmarkInitializedMutualInformationRegistration] Error 1
make[1]: ***
[LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/all] Error 2
make: *** [all] Error 2
[giordanescu at hp6000 buildtest]$