[Insight-developers] SimpleITK dashboard

Dan Mueller dan.muel at gmail.com
Wed Jul 27 15:57:29 EDT 2011 

I'll try playing with a virtual machine, but it's a bit hard for x64...

On 27 July 2011 21:56, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
> CentOS 5.x 64-bit...
>
>
> On 7/27/11 2:52 PM, "Dan Mueller" <dan.muel at gmail.com> wrote:
>
>> What flavor of Linux are you running?
>>
>> On 27 July 2011 21:13, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
>>> Hmm, did a test build, and got this error:
>>>
>>> [ 57%] Generating CSharpTests/TestMirrorPadImageFilter.cs
>>> error CS2007: Unrecognized command-line option: `/platform:x64'
>>>
>>> the results should be up on the dashboard soon.
>>>
>>> -dan
>>>
>>>
>>> On 7/27/11 1:40 PM, "Daniel Blezek" <Blezek.Daniel at mayo.edu> wrote:
>>>
>>>> OK, I installed mono-core and mono-devel.  Check the dashboard tomorrow to
>>>> see
>>>> if all went well!
>>>>
>>>> -dan
>>>>
>>>>
>>>> On 7/27/11 11:32 AM, "Dan Mueller" <dan.muel at gmail.com> wrote:
>>>>
>>>>> Hi Dan,
>>>>>
>>>>>>  If I install Mono, will SimpleITK automatically detect and configure?
>>>>> Yes, C# is considered a "first class" language -- if the packages are
>>>>> installed, CMake tries to find it in the following locations:
>>>>>
>>>>>   # Search for Mono on non-Win32 systems
>>>>>   set( chsarp_mono_names "dmcs" "gmcs" "mcs" "dmcs.exe" "gmcs.exe"
>>>>> "mcs.exe"
>>>>> )
>>>>>   set(
>>>>>     csharp_mono_paths
>>>>>     "/usr/bin/"
>>>>>     "/usr/local/bin/"
>>>>>     "/usr/lib/mono/2.0"
>>>>>   )
>>>>>   find_program(
>>>>>     NAMES ${chsarp_mono_names}
>>>>>     PATHS ${csharp_mono_paths}
>>>>>   )
>>>>>
>>>>> This has been tested on Ubuntu; not sure how it goes on other Linux
>>>>> flavors.
>>>>>
>>>>> Regards, Dan Mueller
>>>>>
>>>>> On 27 July 2011 18:22, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
>>>>>> Hi Dan,
>>>>>>
>>>>>>  If I install Mono, will SimpleITK automatically detect and configure?
>>>>>>
>>>>>> Thanks,
>>>>>> -dan
>>>>>>
>>>>>>
>>>>>> On 7/27/11 7:30 AM, "Dan Mueller" <dan.muel at gmail.com> wrote:
>>>>>>
>>>>>>> Hi John,
>>>>>>>
>>>>>>> Submitting a SimpleITK build on CentOS with Mono C# would be great!
>>>>>>>
>>>>>>> You can find details for installing Mono packages here:
>>>>>>>     http://www.mono-project.com/Mono_Installation
>>>>>>>     http://ftp.novell.com/pub/mono/download-stable/RHEL_5
>>>>>>>
>>>>>>>
>>> http://stackoverflow.com/questions/3510320/install-mono-on-centos5-5-using->>
>>> >>
>>> y
>>>>>>> um
>>>>>>>
>>>>>>> Someone else will have to give instructions for submitting a SimpleITK
>>>>>>> build to the dashboard (David?, Dan B?). Perhaps the following wiki
>>>>>>> page can help get you started:
>>>>>>>
>>>>>>> http://www.itk.org/Wiki/ITK_Policy_and_Procedure_for_Adding_Dashboards
>>>>>>>
>>>>>>> Looking forward to seeing Linux + SimpleITK + C# builds on the dashboard!
>>>>>>>
>>>>>>> Cheers, Dan Mueller
>>>>>>>
>>>>>>> On 26 July 2011 18:04, John McInerney <jmcinerney6 at gmail.com> wrote:
>>>>>>>> Dear Dan,
>>>>>>>>
>>>>>>>> I have a CentOS machine that I would love to try Mono for C# wrapping.
>>>>>>>> I
>>>>>>>> have 30 years of UNIX/Linux/etc.  Been doing CUDA for a while now.  I am
>>>>>>>> hoping Bioscan can just deliver a single machine with our instruments
>>>>>>>> that'll do
>>>>>>>> everything down stream from the embeded (headless) system: GUI,
>>>>>>>> reconstruction,
>>>>>>>> segmentation, and registration.  So, that's my motivation...
>>>>>>>>
>>>>>>>> Been hanging on by my nails with the ITK upgrade.  Can't say I follow
>>>>>>>> everything,
>>>>>>>> but I'm a quick study.  I can do the Mono install.  It may take some
>>>>>>>> time
>>>>>>>> to
>>>>>>>> get
>>>>>>>> ITK 4 going to get to where you are at...  I have code that ran under
>>>>>>>> ITK
>>>>>>>> 3...
>>>>>>>>
>>>>>>>> John
>>>>>>>>
>>>>>>>> On Tue, Jul 26, 2011 at 10:42 AM, Dan Mueller <dan.muel at gmail.com>
>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>> Hi Brad,
>>>>>>>>>
>>>>>>>>> The SimpleITK dashboard is looking good this morning :D (At least for
>>>>>>>>> Linux and Win32 builds.) Out of interest, what branch are these
>>>>>>>>> machines using? I am using remote stage/next, but still get the
>>>>>>>>> DIRECTIONCOLLAPSETOIDENTITY errors...
>>>>>>>>>
>>>>>>>>> Also, are you in charge of the Linux box mi3c-qbert.mayo.edu? I'm just
>>>>>>>>> wondering if it would be possible to install Mono so that C# wrapping
>>>>>>>>> on Linux is covered (unfortunately I don't have access to a Linux
>>>>>>>>> machine for submitting builds at the moment). If you tell me the Linux
>>>>>>>>> flavour, I can provide the few commands needed to install the 2 or 3
>>>>>>>>> Mono-related packages.
>>>>>>>>>
>>>>>>>>> Cheers, Dan Mueller
>>>>>>>>>
>>>>>>>>> On 25 July 2011 15:49, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>>>>>>>>> I agree that is starting to be concerning with the size of the
>>>>>>>>>> library.
>>>>>>>>>> I am
>>>>>>>>>> still amazed with how much it shrinks when the wrapped language
>>>>>>>>>> library
>>>>>>>>>> is
>>>>>>>>>> made. There should be something we can do about this.
>>>>>>>>>> That is great you found a solution. The attached diff is fine. I will
>>>>>>>>>> place
>>>>>>>>>> it onto the end of the current topic. And hopefully, it'll be ready
>>>>>>>>>> for
>>>>>>>>>> merging into master!
>>>>>>>>>> Brad
>>>>>>>>>>
>>>>>>>>>> On Jul 25, 2011, at 1:13 AM, Dan Mueller wrote:
>>>>>>>>>>
>>>>>>>>>> Hi Brad,
>>>>>>>>>>
>>>>>>>>>> Debug builds on windows 32-bit systems may not be supported. The
>>>>>>>>>> library
>>>>>>>>>> just gets too big. You should try to build a release.
>>>>>>>>>>
>>>>>>>>>> Thanks for the info regarding the release build -- I do not encounter
>>>>>>>>>> the "can not seek" error in release mode. However, I notice that
>>>>>>>>>> SimpleITKBasicFilters.lib comes to 700MB, which is getting close to
>>>>>>>>>> 1GB; perhaps something to watch for in the future as SimpleITK grows.
>>>>>>>>>>
>>>>>>>>>> This morning I located the issue with the SimpleITK C# Visual Studio
>>>>>>>>>> 2008 build: it seems VS9 can not handle source dependencies specified
>>>>>>>>>> using a wildcard. I have changed
>>>>>>>>>> Wrapping/CSharpModules/UseCSharp.cmake to glob any wildcard
>>>>>>>>>> expressions (as well as a minor bug fix for FindCSharp when using
>>>>>>>>>> outside of SimpleITK). I have tested the changes using VS9, VS10, and
>>>>>>>>>> make on Unbuntu. Please find the corrected files attached and diff
>>>>>>>>>> below. What is your preferred way of working? Do I push the patch to
>>>>>>>>>> Gerrit?
>>>>>>>>>>
>>>>>>>>>> Cheers, Dan Mueller
>>>>>>
>>>>>> --
>>>>>> Daniel Blezek, PhD
>>>>>> Medical Imaging Informatics Innovation Center
>>>>>>
>>>>>> P 127 or (77) 8 8886
>>>>>> T 507 538 8886
>>>>>> E blezek.daniel at mayo.edu
>>>>>>
>>>>>> Mayo Clinic
>>>>>> 200 First St. S.W.
>>>>>> Harwick SL-44
>>>>>> Rochester, MN 55905
>>>>>> mayoclinic.org
>>>>>> "It is more complicated than you think." -- RFC 1925
>>>>>>
>>>>>>
>>>
>>> --
>>> Daniel Blezek, PhD
>>> Medical Imaging Informatics Innovation Center
>>>
>>> P 127 or (77) 8 8886
>>> T 507 538 8886
>>> E blezek.daniel at mayo.edu
>>>
>>> Mayo Clinic
>>> 200 First St. S.W.
>>> Harwick SL-44
>>> Rochester, MN 55905
>>> mayoclinic.org
>>> "It is more complicated than you think." -- RFC 1925
>>>
>>>
>
> --
> Daniel Blezek, PhD
> Medical Imaging Informatics Innovation Center
>
> P 127 or (77) 8 8886
> T 507 538 8886
> E blezek.daniel at mayo.edu
>
> Mayo Clinic
> 200 First St. S.W.
> Harwick SL-44
> Rochester, MN 55905
> mayoclinic.org
> "It is more complicated than you think." -- RFC 1925
>
>

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