[Insight-developers] SimpleITK dashboard

Daniel Blezek Blezek.Daniel at mayo.edu
Wed Jul 27 12:22:57 EDT 2011


Hi Dan,

  If I install Mono, will SimpleITK automatically detect and configure?

Thanks,
-dan


On 7/27/11 7:30 AM, "Dan Mueller" <dan.muel at gmail.com> wrote:

> Hi John,
> 
> Submitting a SimpleITK build on CentOS with Mono C# would be great!
> 
> You can find details for installing Mono packages here:
>     http://www.mono-project.com/Mono_Installation
>     http://ftp.novell.com/pub/mono/download-stable/RHEL_5
>     
> http://stackoverflow.com/questions/3510320/install-mono-on-centos5-5-using-yum
> 
> Someone else will have to give instructions for submitting a SimpleITK
> build to the dashboard (David?, Dan B?). Perhaps the following wiki
> page can help get you started:
>     http://www.itk.org/Wiki/ITK_Policy_and_Procedure_for_Adding_Dashboards
> 
> Looking forward to seeing Linux + SimpleITK + C# builds on the dashboard!
> 
> Cheers, Dan Mueller
> 
> On 26 July 2011 18:04, John McInerney <jmcinerney6 at gmail.com> wrote:
>> Dear Dan,
>> 
>> I have a CentOS machine that I would love to try Mono for C# wrapping.  I
>> have 30 years of UNIX/Linux/etc.  Been doing CUDA for a while now.  I am
>> hoping Bioscan can just deliver a single machine with our instruments
>> that'll do
>> everything down stream from the embeded (headless) system: GUI,
>> reconstruction,
>> segmentation, and registration.  So, that's my motivation...
>> 
>> Been hanging on by my nails with the ITK upgrade.  Can't say I follow
>> everything,
>> but I'm a quick study.  I can do the Mono install.  It may take some time to
>> get
>> ITK 4 going to get to where you are at...  I have code that ran under ITK
>> 3...
>> 
>> John
>> 
>> On Tue, Jul 26, 2011 at 10:42 AM, Dan Mueller <dan.muel at gmail.com> wrote:
>>> 
>>> Hi Brad,
>>> 
>>> The SimpleITK dashboard is looking good this morning :D (At least for
>>> Linux and Win32 builds.) Out of interest, what branch are these
>>> machines using? I am using remote stage/next, but still get the
>>> DIRECTIONCOLLAPSETOIDENTITY errors...
>>> 
>>> Also, are you in charge of the Linux box mi3c-qbert.mayo.edu? I'm just
>>> wondering if it would be possible to install Mono so that C# wrapping
>>> on Linux is covered (unfortunately I don't have access to a Linux
>>> machine for submitting builds at the moment). If you tell me the Linux
>>> flavour, I can provide the few commands needed to install the 2 or 3
>>> Mono-related packages.
>>> 
>>> Cheers, Dan Mueller
>>> 
>>> On 25 July 2011 15:49, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>>> I agree that is starting to be concerning with the size of the library.
>>>> I am
>>>> still amazed with how much it shrinks when the wrapped language library
>>>> is
>>>> made. There should be something we can do about this.
>>>> That is great you found a solution. The attached diff is fine. I will
>>>> place
>>>> it onto the end of the current topic. And hopefully, it'll be ready for
>>>> merging into master!
>>>> Brad
>>>> 
>>>> On Jul 25, 2011, at 1:13 AM, Dan Mueller wrote:
>>>> 
>>>> Hi Brad,
>>>> 
>>>> Debug builds on windows 32-bit systems may not be supported. The library
>>>> just gets too big. You should try to build a release.
>>>> 
>>>> Thanks for the info regarding the release build -- I do not encounter
>>>> the "can not seek" error in release mode. However, I notice that
>>>> SimpleITKBasicFilters.lib comes to 700MB, which is getting close to
>>>> 1GB; perhaps something to watch for in the future as SimpleITK grows.
>>>> 
>>>> This morning I located the issue with the SimpleITK C# Visual Studio
>>>> 2008 build: it seems VS9 can not handle source dependencies specified
>>>> using a wildcard. I have changed
>>>> Wrapping/CSharpModules/UseCSharp.cmake to glob any wildcard
>>>> expressions (as well as a minor bug fix for FindCSharp when using
>>>> outside of SimpleITK). I have tested the changes using VS9, VS10, and
>>>> make on Unbuntu. Please find the corrected files attached and diff
>>>> below. What is your preferred way of working? Do I push the patch to
>>>> Gerrit?
>>>> 
>>>> Cheers, Dan Mueller

-- 
Daniel Blezek, PhD
Medical Imaging Informatics Innovation Center

P 127 or (77) 8 8886
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E blezek.daniel at mayo.edu

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