[Insight-developers] Data submodule was reverted again ( staging check needed? )

Tue Jan 25 14:12:11 EST 2011

Le 25 janv. 11 à 19:20, Bill Lorensen a écrit :

> Sounds like a "must have" to me if we keep the current process.
>

I agree.

Gaëtan

> Bill
>
> On Tue, Jan 25, 2011 at 1:18 PM, Bradley Lowekamp
> <blowekamp at mail.nih.gov> wrote:
>> Hello,
>> Let's try to bring this back on the topic I started and not on MIDAS.
>> What does everyone think of adding a local hook, as well as one in  
>> the
>> staging area, to prevent the sub-module from going backwards?
>> Brad
>> On Jan 25, 2011, at 1:07 PM, Stephen Aylward wrote:
>>
>> Hi,
>>
>> Zach and Mark have been emailing.   I think "issue" is the right term
>> for this.   Mark wants to upload some data, and the first email
>> exchange gave him admin permissions to do the uploads.   The second
>> email exchange told him that the digital archive standard upon which
>> MIDAS is based defines that communities can contain communities and
>> collections, but collections can only contain items, not communities.
>> He couldn't find a "create community" button within a collection,
>> because that operation isn't allowed.   Zach emailed him the solution
>> yesterday.   We haven't heard back.
>>
>> BUT, that does raise a good point.   I think the upload process for
>> MIDAS and the Insight Journal (they are the same) should be easier.
>>
>> Thanks,
>> Stephen
>>
>> On Tue, Jan 25, 2011 at 12:40 PM, Williams, Norman K
>> <norman-k-williams at uiowa.edu> wrote:
>>
>> Mark Scully (mark-scully at uiowa.edu) is working on it. I don't know  
>> the
>>
>> details.
>>
>> On 1/25/11 11:36 AM, "Stephen Aylward"  
>> <stephen.aylward at kitware.com> wrote:
>>
>> Hi,
>>
>> What problems are you having with MIDAS?
>>
>> Stephen
>>
>> On Tue, Jan 25, 2011 at 12:29 PM, Williams, Norman K
>>
>> <norman-k-williams at uiowa.edu> wrote:
>>
>> Depending on Midas isn't all skittles and beer, either.  When you're
>>
>> having a Midas issue -- which we're currently having with some of our
>>
>> programs that are included in Slicer -- you're dead in the water  
>> until
>>
>> you
>>
>> get Midas to behave.
>>
>> Having your own testing data in a big whomping git repo has it's
>>
>> disadvantages, but it is the least brittle option.
>>
>> On 1/25/11 11:05 AM, "Bill Lorensen" <bill.lorensen at gmail.com> wrote:
>>
>> I still feel that Baseline and small testing data should be a part of
>>
>> the ITK checkout (and not a submodule). Larger data would be well
>>
>> hosted at midas with the hashing presented earlier.
>>
>> The current setup is not developer friendly for testing.
>>
>> Bill
>>
>> On Tue, Jan 25, 2011 at 11:40 AM, Stephen Aylward
>>
>> <stephen.aylward at kitware.com> wrote:
>>
>> CMake/URLs for data hosting?
>>
>> s
>>
>> On Tue, Jan 25, 2011 at 11:08 AM, Bradley Lowekamp
>>
>> <blowekamp at mail.nih.gov> wrote:
>>
>> Hello,
>>
>> I updated the data submodule over the weekend. And moved the
>>
>> submodule
>>
>> pointer along in the ITK project. Unfortunately, this change was over
>>
>> written again. This appears to be a common problem, and this is at
>>
>> least the
>>
>> second time this has happened to me.
>>
>> I believe we need some commit checks and staging area checks to
>>
>> prevent this
>>
>> from happening. I would think that it would not be too difficult to
>>
>> check
>>
>> that the Data submodule pointer only get moved forwards not
>>
>> backwards,
>>
>> during a commit and in the staging area. This would still allow a
>>
>> direct
>>
>> commit into the ITK repository to have more control if needed. I
>>
>> believe
>>
>> this would prevent this kind of accident from happening again. Or is
>>
>> the
>>
>> better solution?
>>
>> I will be restoring the Data submodule pointer now.
>>
>> Thanks,
>>
>> Brad
>>
>> ========================================================
>>
>> Bradley Lowekamp
>>
>> Lockheed Martin Contractor for
>>
>> Office of High Performance Computing and Communications
>>
>> National Library of Medicine
>>
>> blowekamp at mail.nih.gov
>>
>>
>> _______________________________________________
>>
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>>
>>
>> --
>>
>> ==============================
>>
>> Stephen R. Aylward, Ph.D.
>>
>> Director of Medical Imaging Research
>>
>> Kitware, Inc. - North Carolina Office
>>
>> http://www.kitware.com
>>
>> stephen.aylward (Skype)
>>
>> (919) 969-6990 x300
>>
>> _______________________________________________
>>
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>>
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>>
>> http://kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>>
>> http://www.itk.org/Wiki/ITK_FAQ
>>
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>>
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>> _______________________________________________
>>
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>>
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>>
>> http://kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>>
>> http://www.itk.org/Wiki/ITK_FAQ
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>>
>>
>>
>>
>> --
>>
>> ==============================
>>
>> Stephen R. Aylward, Ph.D.
>>
>> Director of Medical Imaging Research
>>
>> Kitware, Inc. - North Carolina Office
>>
>> http://www.kitware.com
>>
>> stephen.aylward (Skype)
>>
>> (919) 969-6990 x300
>>
>>
>>
>>
>>
>> --
>>
>> ==============================
>> Stephen R. Aylward, Ph.D.
>> Director of Medical Imaging Research
>> Kitware, Inc. - North Carolina Office
>> http://www.kitware.com
>> stephen.aylward (Skype)
>> (919) 969-6990 x300
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-developers
>>
>> ========================================================
>>
>> Bradley Lowekamp
>>
>> Lockheed Martin Contractor for
>>
>> Office of High Performance Computing and Communications
>>
>> National Library of Medicine
>>
>> blowekamp at mail.nih.gov
>>
>>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
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-- 
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
http://voxel.jouy.inra.fr  http://www.itk.org
http://www.mandriva.org  http://www.bepo.fr

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