[Insight-developers] LSM meta data & dimensions

Michael Held michael.held at bc.biol.ethz.ch
Wed Feb 8 13:19:06 EST 2006


hi,

does anybody know how to access meta data stored in Zeiss LSM files, e.g.
the ROI information, time between frames in time series, distance or
thickness of optical slices in z-stacks?
and most important: how are the axes labeled? now I got an 3D-RGB image
(which is actually 4D) with dimension labels width,height,time.
when I cut a time-segment out using itk::ExtractImageFilter and write it
back to LSM the axes are messed up and I get width,height,depth and all meta
data is lost...

cheers,
michael  




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