[Dart] connection problem ?
Hirohito Okuda
hirohito.okuda at yale.edu
Wed May 9 17:03:33 EDT 2007
Dan,
I really appreciate for your help.
I already set up a clean new server for my nightly test from tonight..
Do you have any suggestions for further investigation ?
It is a bit pain if we lose the test result so far, but we can get along
for now.
Hirohito
Blezek, Daniel J (GE, Research) wrote:
> Hi Hirohito,
>
> I'm a bit at a loss. Can you try creating a new Dart server and
> project somewhere else? It would help to understand if everything is
> broken, or just the existing project / Server.
>
> -dan
>
> -----Original Message-----
> From: Hirohito Okuda [mailto:hirohito.okuda at yale.edu]
> Sent: Wednesday, May 09, 2007 4:16 PM
> To: Blezek, Daniel J (GE, Research); Hirohito Okuda
> Cc: dart at public.kitware.com
> Subject: Re: [Dart] connection problem ?
>
> Dan,
>
> Actual name of MyServer and MyProject is "Server" and "BioImageSuite",
> respectively.
> Attached are results of
> ls -al Server/Database
> ls -al Server/Database/Server
> ls -al BioImageSuite/Database
> ls -al BioImageSuite/Database/BioImageSuite
>
> These information are from "backup" data.. After some trial, original
> data were backuped and eliminated . So, some information might be lost.
>
> >ls -al Server/Database
> total 12
> drwxr-xr-x 3 root root 4096 Nov 17 16:21 .
> drwxr-xr-x 9 root root 4096 May 9 13:51 ..
> drwxr-xr-x 5 root root 4096 May 9 14:16 Server
>
> >ls -al Server/Database/Server
> total 32
> drwxr-xr-x 5 root root 4096 May 9 14:16 .
> drwxr-xr-x 3 root root 4096 Nov 17 16:21 ..
> -rw-r--r-- 1 root root 4 Mar 1 09:04 dbex.lck
> -rw-r--r-- 1 root root 38 May 9 14:16 db.lck
> drwxr-xr-x 2 root root 4096 Nov 17 16:21 log drwxr-xr-x 2 root root
> 4096 Nov 17 16:21 seg0
> -rw-r--r-- 1 root root 869 Nov 17 16:21 service.properties drwxr-xr-x
> 2 root root 4096 May 9 14:16 tmp
>
> >ls -al BioImageSuite/Database
> total 12
> drwxr-xr-x 3 root root 4096 May 9 13:37 .
> drwxr-xr-x 12 root root 4096 May 9 13:38 ..
> drwxr-xr-x 5 root root 4096 May 9 13:37 BioImageSuite
>
> >ls -al BioImageSuite/Database/BioImageSuite
> total 32
> drwxr-xr-x 5 root root 4096 May 9 13:37 .
> drwxr-xr-x 3 root root 4096 May 9 13:37 ..
> -rw-r--r-- 1 root root 4 May 9 13:37 dbex.lck
> -rw-r--r-- 1 root root 38 May 9 13:37 db.lck
> drwxr-xr-x 2 root root 4096 May 9 13:37 log drwxr-xr-x 2 root root
> 4096 May 9 13:37 seg0
> -rw-r--r-- 1 root root 883 May 9 13:37 service.properties drwxr-xr-x
> 2 root root 4096 May 9 13:37 tmp
>
> ..Hirohito
>
> Hirohito
> Blezek, Daniel J (GE, Research) wrote:
>
>> Sorry, can you send an "ls -la" of MyServer/Database and
>> MyProject/Database?
>>
>> -dan
>>
>> -----Original Message-----
>> From: Hirohito Okuda [mailto:hirohito.okuda at yale.edu]
>> Sent: Wednesday, May 09, 2007 3:34 PM
>> To: Blezek, Daniel J (GE, Research)
>> Cc: dart at public.kitware.com; Hirohito Okuda
>> Subject: Re: [Dart] connection problem ?
>>
>> Java seems to be fine..Also result of ls attached.
>>
>> >java -version
>>
>> java version "1.5.0_06"
>> Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_06-b05)
>> Java HotSpot(TM) Client VM (build 1.5.0_06-b05, mixed mode, sharing)
>>
>> >ls MyServer
>>
>> Database
>> DefaultServer.xml
>> DefaultTemplates
>> HTML
>> LocalTemplates
>> Plugins
>> realm.properties
>> ServerSchema.sql
>> Server.xml
>> Templates
>> Temporary
>>
>> Hirohito
>>
>> Blezek, Daniel J (GE, Research) wrote:
>>
>>
>>> Hi Hirohito,
>>>
>>> Can you verify that you have a version of Java >= 1.5 and that it
>>> is
>>>
>>>
>>
>>
>>> the Sun Java? We've had some problems with other versions (notably
>>> GNU). Also, have a peek in the MyServer directory, there should be a
>>>
>
>
>>> few Database related files there, just to make sure things look ok.
>>>
>>> -dan
>>>
>>> -----Original Message-----
>>> From: Hirohito Okuda [mailto:hirohito.okuda at yale.edu]
>>> Sent: Wednesday, May 09, 2007 2:59 PM
>>> To: Blezek, Daniel J (GE, Research)
>>> Cc: dart at public.kitware.com
>>> Subject: Re: [Dart] connection problem ?
>>>
>>> Hi Dan,
>>>
>>> I did not update Dart. MyServer and MyProject is exactly the same as
>>> before.
>>>
>>> The reason why I had to restart was, I updated the the virtual
>>> machine
>>> (vmware)
>>> on which the Dart server had been running.. I don't know this caused
>>> the problem.
>>>
>>> --Hirohito
>>>
>>> Appreciate for your quick response..
>>>
>>>
>>> Blezek, Daniel J (GE, Research) wrote:
>>>
>>>
>>>
>>>> Hi,
>>>>
>>>> Hmmm, strange bug. Did you update Dart? Did you move your
>>>> MyServer
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>>> and MyProject directories? This must be done carefully, as the
>>>> configuration files have full path names.
>>>>
>>>> -dan
>>>>
>>>> -----Original Message-----
>>>> From: dart-bounces+blezek=crd.ge.com at public.kitware.com
>>>> [mailto:dart-bounces+blezek=crd.ge.com at public.kitware.com] On Behalf
>>>>
>
>
>>>> Of Hirohito Okuda
>>>> Sent: Wednesday, May 09, 2007 2:11 PM
>>>> To: Hirohito Okuda; dart at public.kitware.com
>>>> Subject: [Dart] connection problem ?
>>>>
>>>> Hi, when I tried to restart the Dart server by
>>>>
>>>> >java -jar DartServer.jar MyServer MyProject
>>>>
>>>> Dart gave me following errors. Does anybody have any idea ?
>>>> I have been using Dart for a year so, and it had been working fine
>>>> so
>>>>
>>>>
>>
>>
>>>> far.
>>>>
>>>> Thanks
>>>>
>>>> Here is excerpt from output message.
>>>>
>>>>
>>>>
>>>>
>>>>> -------------------------------------------------------------------
>>>>> -
>>>>> -
>>>>> -
>>>>> --
>>>>>
>>>>> <09 May 2007 11:28:34,480> [main] INFO dart.server.Server
>>>>> Realm configuration file:
>>>>> /mnt/repositories/dart/Server/realm.properties
>>>>> <09 May 2007 11:28:34,851> [main] WARN
>>>>> org.mortbay.http.JDBCUserRealm
>>>>>
>>>>>
>>>>>
>>>
>>>
>>>
>>>>> UserRealm Dart could not connect to database; will try later SQL
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>>
>>>>> Exception: Failed to start database
>>>>>
>>>>>
>>>>>
>>>>>
>>>> '/mnt/repositories/dart/Server/Database/Server', see the next
>>>> exception for details.
>>>>
>>>>
>>>>
>>>>
>>>>> at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown
>>>>>
>>>>>
>>>>>
>>>>>
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown
>>>>>
>>>>>
>>>>>
>>>>>
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at
>>>>>
>>>>>
>>>>>
>>>>>
>>>> org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at
>>>>>
>>>>>
>>>>>
>>>>>
>>>> org.apache.derby.impl.jdbc.EmbedConnection.newSQLException(Unknown
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at
>>>>>
>>>>>
>>>>>
>>>>>
>>>> org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown
>>>>>
>>>>>
>>>>>
>>>>>
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(Unknown
>>>>>
>>>>>
>>>>>
>>>>>
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at org.apache.derby.jdbc.Driver30.getNewEmbedConnection(Unknown
>>>>>
>>>>>
>>>>>
>>>>>
>>>> Source)
>>>>
>>>>
>>>>
>>>>
>>>>> at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
>>>>> at java.sql.DriverManager.getConnection(Unknown Source)
>>>>> at java.sql.DriverManager.getConnection(Unknown Source)
>>>>> at
>>>>>
>>>>>
>>>>>
>>>>>
>>>> org.mortbay.http.JDBCUserRealm.connectDatabase(JDBCUserRealm.java:17
>>>> 4
>>>> )
>>>>
>>>>
>>>>
>>>>
>>>>> at dart.server.Server.start(Server.java:293)
>>>>> at dart.server.Server.start(Server.java:228)
>>>>> at dart.DartServer.main(DartServer.java:159)
>>>>> <09 May 2007 11:28:34,855> [main] DEBUG dart.server.ServletManager
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>> _______________________________________________
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>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>
>
>
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