[Dart] connection problem ?
Blezek, Daniel J (GE, Research)
blezek at crd.ge.com
Wed May 9 16:36:10 EDT 2007
Hi Hirohito,
I'm a bit at a loss. Can you try creating a new Dart server and
project somewhere else? It would help to understand if everything is
broken, or just the existing project / Server.
-dan
-----Original Message-----
From: Hirohito Okuda [mailto:hirohito.okuda at yale.edu]
Sent: Wednesday, May 09, 2007 4:16 PM
To: Blezek, Daniel J (GE, Research); Hirohito Okuda
Cc: dart at public.kitware.com
Subject: Re: [Dart] connection problem ?
Dan,
Actual name of MyServer and MyProject is "Server" and "BioImageSuite",
respectively.
Attached are results of
ls -al Server/Database
ls -al Server/Database/Server
ls -al BioImageSuite/Database
ls -al BioImageSuite/Database/BioImageSuite
These information are from "backup" data.. After some trial, original
data were backuped and eliminated . So, some information might be lost.
>ls -al Server/Database
total 12
drwxr-xr-x 3 root root 4096 Nov 17 16:21 .
drwxr-xr-x 9 root root 4096 May 9 13:51 ..
drwxr-xr-x 5 root root 4096 May 9 14:16 Server
>ls -al Server/Database/Server
total 32
drwxr-xr-x 5 root root 4096 May 9 14:16 .
drwxr-xr-x 3 root root 4096 Nov 17 16:21 ..
-rw-r--r-- 1 root root 4 Mar 1 09:04 dbex.lck
-rw-r--r-- 1 root root 38 May 9 14:16 db.lck
drwxr-xr-x 2 root root 4096 Nov 17 16:21 log drwxr-xr-x 2 root root
4096 Nov 17 16:21 seg0
-rw-r--r-- 1 root root 869 Nov 17 16:21 service.properties drwxr-xr-x
2 root root 4096 May 9 14:16 tmp
>ls -al BioImageSuite/Database
total 12
drwxr-xr-x 3 root root 4096 May 9 13:37 .
drwxr-xr-x 12 root root 4096 May 9 13:38 ..
drwxr-xr-x 5 root root 4096 May 9 13:37 BioImageSuite
>ls -al BioImageSuite/Database/BioImageSuite
total 32
drwxr-xr-x 5 root root 4096 May 9 13:37 .
drwxr-xr-x 3 root root 4096 May 9 13:37 ..
-rw-r--r-- 1 root root 4 May 9 13:37 dbex.lck
-rw-r--r-- 1 root root 38 May 9 13:37 db.lck
drwxr-xr-x 2 root root 4096 May 9 13:37 log drwxr-xr-x 2 root root
4096 May 9 13:37 seg0
-rw-r--r-- 1 root root 883 May 9 13:37 service.properties drwxr-xr-x
2 root root 4096 May 9 13:37 tmp
..Hirohito
Hirohito
Blezek, Daniel J (GE, Research) wrote:
> Sorry, can you send an "ls -la" of MyServer/Database and
> MyProject/Database?
>
> -dan
>
> -----Original Message-----
> From: Hirohito Okuda [mailto:hirohito.okuda at yale.edu]
> Sent: Wednesday, May 09, 2007 3:34 PM
> To: Blezek, Daniel J (GE, Research)
> Cc: dart at public.kitware.com; Hirohito Okuda
> Subject: Re: [Dart] connection problem ?
>
> Java seems to be fine..Also result of ls attached.
>
> >java -version
>
> java version "1.5.0_06"
> Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_06-b05)
> Java HotSpot(TM) Client VM (build 1.5.0_06-b05, mixed mode, sharing)
>
> >ls MyServer
>
> Database
> DefaultServer.xml
> DefaultTemplates
> HTML
> LocalTemplates
> Plugins
> realm.properties
> ServerSchema.sql
> Server.xml
> Templates
> Temporary
>
> Hirohito
>
> Blezek, Daniel J (GE, Research) wrote:
>
>> Hi Hirohito,
>>
>> Can you verify that you have a version of Java >= 1.5 and that it
>> is
>>
>
>
>> the Sun Java? We've had some problems with other versions (notably
>> GNU). Also, have a peek in the MyServer directory, there should be a
>> few Database related files there, just to make sure things look ok.
>>
>> -dan
>>
>> -----Original Message-----
>> From: Hirohito Okuda [mailto:hirohito.okuda at yale.edu]
>> Sent: Wednesday, May 09, 2007 2:59 PM
>> To: Blezek, Daniel J (GE, Research)
>> Cc: dart at public.kitware.com
>> Subject: Re: [Dart] connection problem ?
>>
>> Hi Dan,
>>
>> I did not update Dart. MyServer and MyProject is exactly the same as
>> before.
>>
>> The reason why I had to restart was, I updated the the virtual
>> machine
>> (vmware)
>> on which the Dart server had been running.. I don't know this caused
>> the problem.
>>
>> --Hirohito
>>
>> Appreciate for your quick response..
>>
>>
>> Blezek, Daniel J (GE, Research) wrote:
>>
>>
>>> Hi,
>>>
>>> Hmmm, strange bug. Did you update Dart? Did you move your
>>> MyServer
>>>
>>>
>>
>>
>>> and MyProject directories? This must be done carefully, as the
>>> configuration files have full path names.
>>>
>>> -dan
>>>
>>> -----Original Message-----
>>> From: dart-bounces+blezek=crd.ge.com at public.kitware.com
>>> [mailto:dart-bounces+blezek=crd.ge.com at public.kitware.com] On Behalf
>>> Of Hirohito Okuda
>>> Sent: Wednesday, May 09, 2007 2:11 PM
>>> To: Hirohito Okuda; dart at public.kitware.com
>>> Subject: [Dart] connection problem ?
>>>
>>> Hi, when I tried to restart the Dart server by
>>>
>>> >java -jar DartServer.jar MyServer MyProject
>>>
>>> Dart gave me following errors. Does anybody have any idea ?
>>> I have been using Dart for a year so, and it had been working fine
>>> so
>>>
>
>
>>> far.
>>>
>>> Thanks
>>>
>>> Here is excerpt from output message.
>>>
>>>
>>>
>>>> -------------------------------------------------------------------
>>>> -
>>>> -
>>>> -
>>>> --
>>>>
>>>> <09 May 2007 11:28:34,480> [main] INFO dart.server.Server
>>>> Realm configuration file:
>>>> /mnt/repositories/dart/Server/realm.properties
>>>> <09 May 2007 11:28:34,851> [main] WARN
>>>> org.mortbay.http.JDBCUserRealm
>>>>
>>>>
>>
>>
>>>> UserRealm Dart could not connect to database; will try later SQL
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>>> Exception: Failed to start database
>>>>
>>>>
>>>>
>>> '/mnt/repositories/dart/Server/Database/Server', see the next
>>> exception for details.
>>>
>>>
>>>
>>>> at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown
>>>>
>>>>
>>>>
>>> Source)
>>>
>>>
>>>
>>>> at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown
>>>>
>>>>
>>>>
>>> Source)
>>>
>>>
>>>
>>>> at
>>>>
>>>>
>>>>
>>> org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown
>>> Source)
>>>
>>>
>>>
>>>> at
>>>>
>>>>
>>>>
>>> org.apache.derby.impl.jdbc.EmbedConnection.newSQLException(Unknown
>>> Source)
>>>
>>>
>>>
>>>> at
>>>>
>>>>
>>>>
>>> org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown
>>> Source)
>>>
>>>
>>>
>>>> at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown
>>>>
>>>>
>>>>
>>> Source)
>>>
>>>
>>>
>>>> at org.apache.derby.impl.jdbc.EmbedConnection30.<init>(Unknown
>>>>
>>>>
>>>>
>>> Source)
>>>
>>>
>>>
>>>> at org.apache.derby.jdbc.Driver30.getNewEmbedConnection(Unknown
>>>>
>>>>
>>>>
>>> Source)
>>>
>>>
>>>
>>>> at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
>>>> at java.sql.DriverManager.getConnection(Unknown Source)
>>>> at java.sql.DriverManager.getConnection(Unknown Source)
>>>> at
>>>>
>>>>
>>>>
>>> org.mortbay.http.JDBCUserRealm.connectDatabase(JDBCUserRealm.java:17
>>> 4
>>> )
>>>
>>>
>>>
>>>> at dart.server.Server.start(Server.java:293)
>>>> at dart.server.Server.start(Server.java:228)
>>>> at dart.DartServer.main(DartServer.java:159)
>>>> <09 May 2007 11:28:34,855> [main] DEBUG dart.server.ServletManager
>>>>
>>>>
>>>>
>>>>
>>> _______________________________________________
>>> Dart mailing list
>>> Dart at public.kitware.com
>>> http://public.kitware.com/mailman/listinfo/dart
>>>
>>>
>>>
>>>
>>>
>>
>>
>
>
>
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