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<p class="MsoNormal">Hello Sara,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Please take a look at this example on readthedocs (part of the Examples found in the SimpleITK source):<o:p></o:p></p>
<p class="MsoNormal"><a href="http://simpleitk.readthedocs.io/en/latest/Examples/DicomSeriesReadModifyWrite/Documentation.html">http://simpleitk.readthedocs.io/en/latest/Examples/DicomSeriesReadModifyWrite/Documentation.html</a><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Writing a valid DICOM series which contains all of the tag information you need may be tricky, depending on the information you need to encode in the meta-data dictionary (private tags etc.).<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">As a side note, the problem you have with the series writer is that it is writing each of the images into its own series.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"> hope this helps<o:p></o:p></p>
<p class="MsoNormal"> Ziv<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">Sara Gh <sg.ele.eng@gmail.com><br>
<b>Date: </b>Wednesday, June 21, 2017 at 10:19 AM<br>
<b>To: </b>"community@itk.org" <community@itk.org><br>
<b>Subject: </b>[ITK] Problem with Writing Dicom Series<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hello, <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I have a question regarding writing Dicom series using SimpleITK in Python. I read a 3D scan, resampled it, and stored it as a Dicom series. However, when I try to read the stored data, I am unable to load the whole 3D images and it only
displays one of the slices. It seems that the header is corrupted. I would be thankful if someone could help me to fix this issue. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Here is my write method:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">def WriteDicomSeries(imagein,outDir):<o:p></o:p></p>
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<p class="MsoNormal"> writer = sitk.ImageSeriesWriter()<o:p></o:p></p>
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<p class="MsoNormal"> filenames = [ outDir+'MR_{0:04}.dcm'.format(i) for i in range(imagein.GetSize()[2])] <o:p></o:p></p>
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<p class="MsoNormal"> writer.SetFileNames(filenames)<o:p></o:p></p>
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<p class="MsoNormal"> writer.Execute(imagein)<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Thanks,<o:p></o:p></p>
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<p class="MsoNormal">Sara<o:p></o:p></p>
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