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Hello Matias,
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<div class="">Ziv's patch was merged into SimpleITK’s master branch yesterday. The CDash builds[1] compiled the update and created binaries which are linked in the golden boxes. I believe you want CSharp for window 64[2].</div>
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<div class="">Enjoy!</div>
<div class="">Brad</div>
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<div class="">[1] <a href="https://open.cdash.org/index.php?project=SimpleITK" class="">https://open.cdash.org/index.php?project=SimpleITK</a></div>
<div class="">[2] <a href="https://open.cdash.org/viewFiles.php?buildid=4839224" class="">https://open.cdash.org/viewFiles.php?buildid=4839224</a></div>
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<div class="">On Apr 2, 2017, at 9:58 AM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C] <<a href="mailto:zivrafael.yaniv@nih.gov" class="">zivrafael.yaniv@nih.gov</a>> wrote:</div>
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<span style="font-size: 10.5pt; font-family: Calibri;" class="">Hi Matias,<o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: Calibri;" class=""><o:p class=""> </o:p></span></div>
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<span style="font-size: 10.5pt; font-family: Calibri;" class="">We should get it into the main SimpleITK repository shortly (after testing etc..). For now please follow Dženan’s recommendation (clone my forked repository, checkout the dicomWrite branch and
build SimpleITK from that branch).<o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: Calibri;" class=""><o:p class=""> </o:p></span></div>
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<span style="font-size: 10.5pt; font-family: Calibri;" class=""> regards<o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: Calibri;" class=""> Ziv</span><span style="font-size: 11pt; font-family: Calibri;" class=""><o:p class=""></o:p></span></div>
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<span style="font-size: 11pt; font-family: Calibri;" class=""><o:p class=""> </o:p></span></div>
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<b class=""><span style="font-family: Calibri;" class="">From:<span class="Apple-converted-space"> </span></span></b><span style="font-family: Calibri;" class="">Dženan Zukić <<a href="mailto:dzenanz@gmail.com" class="">dzenanz@gmail.com</a>></span><span style="font-family: PMingLiU;" class=""><br class="">
</span><b class=""><span style="font-family: Calibri;" class="">Date:<span class="Apple-converted-space"> </span></span></b><span style="font-family: Calibri;" class="">Saturday, April 1, 2017 at 9:37 AM<br class="">
<b class="">To:<span class="Apple-converted-space"> </span></b>Matias <<a href="mailto:matimontg@gmail.com" class="">matimontg@gmail.com</a>><br class="">
<b class="">Cc:<span class="Apple-converted-space"> </span></b>Insight-users <<a href="mailto:insight-users@itk.org" class="">insight-users@itk.org</a>><br class="">
<b class="">Subject:<span class="Apple-converted-space"> </span></b>Re: [ITK-users] [ITK] SimpleITK Serieswriter and DicomTags<o:p class=""></o:p></span></div>
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<o:p class=""> </o:p></div>
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<span style="font-family: Verdana;" class="">Hi Matias,<o:p class=""></o:p></span></div>
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<span style="font-family: Verdana;" class="">you should use branch dicomWrite from<span class="Apple-converted-space"> </span><a href="https://github.com/zivy/SimpleITK/tree/dicomWrite" style="color: purple; text-decoration: underline;" class="">Ziv's fork</a>.<o:p class=""></o:p></span></div>
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<span style="font-family: Verdana;" class="">Regards,<o:p class=""></o:p></span></div>
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<span style="font-family: Verdana;" class="">Dženan<o:p class=""></o:p></span></div>
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<o:p class=""> </o:p></div>
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On Sat, Apr 1, 2017 at 2:48 AM, Matias <<a href="mailto:matimontg@gmail.com" target="_blank" style="color: purple; text-decoration: underline;" class="">matimontg@gmail.com</a>> wrote:<o:p class=""></o:p></div>
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Thanks Yaniv. So how do I get this branch? I simply download the latest version of SimpleITK?<o:p class=""></o:p></p>
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El vie., 31 de mar. de 2017 a la(s) 19:18, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C] [via ITK - Users] <<a href="http://user/SendEmail.jtp?type=node&node=38064&i=0" target="_blank" style="color: purple; text-decoration: underline;" class="">[hidden email]</a>> escribió:<o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class="">Hello Matias,</span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class=""> </span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class="">Please take a look at the following github pull request (<a href="https://github.com/SimpleITK/SimpleITK/pull/134)" target="_blank" style="color: purple; text-decoration: underline;" class="">https://github.com/SimpleITK/SimpleITK/pull/134)</a>,
this branch should provide the functionality you are looking for. See the Python example script included in the commit for the usage of the DICOM series writing.</span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class=""> </span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class=""> hope this helps</span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class=""> Ziv</span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class=""> </span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><span style="font-size: 11pt; font-family: Calibri;" class=""> </span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><b class=""><span style="font-family: Calibri;" class="">From:<span class="Apple-converted-space"> </span></span></b></span><span class="m7380090971284168540gmailmsg"><span style="font-family: Calibri;" class="">Matias
<<a href="http://user/SendEmail.jtp?type=node&node=38063&i=0" target="_blank" style="color: purple; text-decoration: underline;" class="">[hidden email]</a>></span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><b class="">Date:<span class="Apple-converted-space"> </span></b>Thursday, March 30, 2017 at 12:14 PM</span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><b class=""><span style="font-family: Calibri;" class="">To:<span class="Apple-converted-space"> </span></span></b></span><span class="m7380090971284168540gmailmsg"><span style="font-family: Calibri;" class="">"<a href="http://user/SendEmail.jtp?type=node&node=38063&i=1" target="_blank" style="color: purple; text-decoration: underline;" class="">[hidden
email]</a>" <<a href="http://user/SendEmail.jtp?type=node&node=38063&i=2" target="_blank" style="color: purple; text-decoration: underline;" class="">[hidden email]</a>></span></span><o:p class=""></o:p></div>
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<span class="m7380090971284168540gmailmsg"><b class="">Subject:<span class="Apple-converted-space"> </span></b>Re: [ITK-users] [ITK] SimpleITK Serieswriter and DicomTags</span></span><o:p class=""></o:p></div>
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Yes, this is what I would need to migrate to C#:<o:p class=""></o:p></div>
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It basically reads a dicom directory and performs rotation on the volume, then writes the resulting images back to a directory, copying the tags from the original images.<o:p class=""></o:p></div>
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std::cerr << argv[0] << " Directorio_A_Rotar DirectorioResultante Gamma Beta Alfa CentroRotacionX CentroRotacionY CentroRotacionZ"<o:p class=""></o:p></div>
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reader->SetImageIO(gdcmIO);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::GDCMSeriesFileNames NamesGeneratorType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
NamesGeneratorType::Pointer nameGenerator = NamesGeneratorType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
nameGenerator->SetUseSeriesDetails(true);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
nameGenerator->AddSeriesRestriction("0008|0021");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
nameGenerator->SetDirectory(argv[1]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
try<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << std::endl << "The directory: " << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << std::endl << argv[1] << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << "Contains the following DICOM Series: ";<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef std::vector< std::string > SeriesIdContainer;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
const SeriesIdContainer & seriesUID = nameGenerator->GetSeriesUIDs();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
SeriesIdContainer::const_iterator seriesItr = seriesUID.begin();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
SeriesIdContainer::const_iterator seriesEnd = seriesUID.end();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
while (seriesItr != seriesEnd)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << seriesItr->c_str() << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
++seriesItr;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string seriesIdentifier;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesIdentifier = seriesUID.begin()->c_str();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << "Now reading series: " << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << seriesIdentifier << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef std::vector< std::string > FileNamesContainer;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FileNamesContainer fileNames;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
fileNames = nameGenerator->GetFileNames(seriesIdentifier);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
reader->SetFileNames(fileNames);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
try<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
reader->Update();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
catch (itk::ExceptionObject &ex)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << ex << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
return EXIT_FAILURE;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
const ImageType * inputImage = reader->GetOutput();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
/*int numerodedicoms = inputImage->GetLargestPossibleRegion().GetSize()[2];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
int dicomcentral = numerodedicoms / 2;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << "Dimenion " << dicomcentral << std::endl;*/<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//itk::EncapsulateMetaData<std::string>(dictionary, "0020|0032","-208\\-236\\66");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::ResampleImageFilter<ImageType, ImageType> FilterType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FilterType::Pointer FiltroResample = FilterType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetInput(reader->GetOutput());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::LinearInterpolateImageFunction<ImageType, double > InterpolatorType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
InterpolatorType::Pointer interpolator = InterpolatorType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetInterpolator(interpolator);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetOutputDirection(inputImage->GetDirection());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetOutputOrigin(inputImage->GetOrigin());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ImageType::SizeType inputSize = inputImage->GetLargestPossibleRegion().GetSize();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetSize(inputSize);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
const ImageType::SpacingType& inputSpacing = inputImage->GetSpacing();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetOutputSpacing(inputSpacing);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetDefaultPixelValue(-1000); //Cambiar por un parametro<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::Euler3DTransform< double > TransformType; //Transform<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
TransformType::Pointer transform = TransformType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
double alfa, beta, gamma, centro_rotacion_X, centro_rotacion_Y, centro_rotacion_Z;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
gamma = atof(argv[3]); <o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
beta= atof(argv[4]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
alfa = atof(argv[5]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
centro_rotacion_X = atof(argv[6]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
centro_rotacion_Y = atof(argv[7]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
centro_rotacion_Z = atof(argv[8]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
transform->SetRotation(gamma, beta, alfa); //Radianes en el siguiente orden en ITK: Gamma, Beta, Alfa | Ibarra<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//double centro[3] = { -14.8371, -54.9443, 175.75 }; //XmmPromedio, YmmPromedio, Z Central (mm): Leer directorio y tomar la del medio<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
double centro[3] = { centro_rotacion_X, centro_rotacion_Y, centro_rotacion_Z }; //XmmPromedio, YmmPromedio, Z Central (mm): Leer directorio y tomar la del medio<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
transform->SetCenter(centro);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << "Centro: " << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << transform->GetCenter() << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->SetTransform(transform);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//FiltroResample->SetMetaDataDictionary(dictionary);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
try<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->Update();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
catch (itk::ExceptionObject &ex)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
return EXIT_FAILURE;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ReaderType::DictionaryRawPointer inputDict = (*(reader->GetMetaDataDictionaryArray()))[0];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ReaderType::DictionaryArrayType outputArray;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//std::cout << "array: " << std::endl << outputArray[0] << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// To keep the new series in the same study as the original we need<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// to keep the same study UID. But we need new series and frame of<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// reference UID's.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
gdcm::UIDGenerator suid;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//std::string seriesUID = suid.Generate();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
gdcm::UIDGenerator fuid;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string frameOfReferenceUID = fuid.Generate();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string studyUID;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string sopClassUID;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::ExposeMetaData<std::string>(*inputDict, "0020|000d", studyUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::ExposeMetaData<std::string>(*inputDict, "0008|0016", sopClassUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
gdcmIO->KeepOriginalUIDOn();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
using namespace std;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
double myArray_Z[70]; //Cambiar esto por un argumento que especifica la cantidad de imagenes.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
double myArray_X[70]; //Cambiar esto por un argumento que especifica la cantidad de imagenes.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
double myArray_Y[70]; //Cambiar esto por un argumento que especifica la cantidad de imagenes.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ifstream file("file.txt");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
if (<a href="http://file.is" class="">file.is</a>_open())<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
for (int i = 0; i < 70; ++i) //Recordar cambiar por el argumento que especifica cantidad de imagenes<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
file >> myArray_Z[i];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << "valor primer Z array: " << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << myArray_Z[0] << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
for (unsigned int f = 0; f < inputSize[2]; f++)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Create a new dictionary for this slice<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ReaderType::DictionaryRawPointer dict = new ReaderType::DictionaryType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Copy the dictionary from the first slice<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
CopyDictionary(*inputDict, *dict);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Set the UID's for the study, series, SOP and frame of reference<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0020|000d", studyUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//itk::EncapsulateMetaData<std::string>(*dict, "0020|000e", seriesUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0020|0052", frameOfReferenceUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
gdcm::UIDGenerator sopuid;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string sopInstanceUID = sopuid.Generate();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0008|0018", sopInstanceUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0002|0003", sopInstanceUID);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Change fields that are slice specific<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::ostringstream value;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << f + 1;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Image Number<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0020|0013", value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Series Description - Append new description to current series<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// description<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string oldSeriesDesc;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::ExposeMetaData<std::string>(*inputDict, "0008|103e", oldSeriesDesc);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << oldSeriesDesc<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<< ": Resampled with pixel spacing "<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<< inputSpacing[0] << ", "<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<< inputSpacing[1] << ", "<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<< inputSpacing[2];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// This is an long string and there is a 64 character limit in the<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// standard<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
unsigned lengthDesc = value.str().length();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string seriesDesc(value.str(), 0,<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
lengthDesc > 64 ? 64<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
: lengthDesc);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0008|103e", seriesDesc);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Series Number<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << 1001;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0020|0011", value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Derivation Description - How this image was derived<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
for (int i = 0; i < argc; i++)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << argv[i] << " ";<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
lengthDesc = value.str().length();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string derivationDesc(value.str(), 0,<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
lengthDesc > 1024 ? 1024<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
: lengthDesc);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0008|2111", derivationDesc);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Image Position Patient: This is calculated by computing the<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// physical coordinate of the first pixel in each slice.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ImageType::PointType position;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
ImageType::IndexType index;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
index[0] = 0;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
index[1] = 0;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
index[2] = myArray_Z[f];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
FiltroResample->GetOutput()->TransformIndexToPhysicalPoint(index, position);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//El origen que calculamos en el proyecto no se toca. (Origen = origen - average)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//Cambiamos el ImageOrientationPatient SOLAMENTE si el valor original en la imagen es: 1\0\0\0\1\0. En el caso que se cambia el signo, se debe cambiar el signo del origen<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//value << -1 << "\\" << 0 << "\\" << 0 << "\\" << 0 << "\\" << -1 << "\\" << 0; //PASAR ESTO POR ARGUMENTO!!!<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
//itk::EncapsulateMetaData<std::string>(*dict, "0020|0037", value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << -235.1629 << "\\" << -195.0557 << "\\" << myArray_Z[f]; //PASAR ESTO POR ARGUMENTO!!! El origen - Centro<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0020|0032", value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Slice Location: For now, we store the z component of the Image<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Position Patient.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << position[2];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0020|1041", value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Slice Thickness: For now, we store the z spacing<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str("");<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value << inputSpacing[2];<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0018|0050",<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Spacing Between Slices<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(*dict, "0018|0088",<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
value.str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
// Save the dictionary<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
outputArray.push_back(dict);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::ImageFileWriter< ImageType > WriterType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
WriterType::Pointer writer = WriterType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::ImageSeriesWriter< ImageType, ImageType_Serie > SeriesWriterType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesWriter->SetInput(FiltroResample->GetOutput());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
writer->SetFileName(argv[2]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
writer->SetInput(FiltroResample->GetOutput());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itksys::SystemTools::MakeDirectory("Test"); //PASAR ESTO POR ARGUMENTO!!<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::NumericSeriesFileNames OutputNamesGeneratorType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
OutputNamesGeneratorType::Pointer outputNames = OutputNamesGeneratorType::New();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string seriesFormat("Test"); //PASAR ESTO POR ARGUMENTO!!<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesFormat = seriesFormat + "/" + "IM%d.dcm";<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
outputNames->SetSeriesFormat(seriesFormat.c_str());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
outputNames->SetStartIndex(1);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
outputNames->SetEndIndex(inputSize[2]);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesWriter->SetImageIO(gdcmIO);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesWriter->SetFileNames(outputNames->GetFileNames());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesWriter->SetMetaDataDictionaryArray(&outputArray);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << "Escribiendo la imagen como..." << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << argv[2] << std::endl << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
try<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
writer->Update();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
seriesWriter->Update();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
catch (itk::ExceptionObject &ex)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << ex << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
return EXIT_FAILURE;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
catch (itk::ExceptionObject &ex)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::cout << ex << std::endl;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
return EXIT_FAILURE;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
return EXIT_SUCCESS;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
void CopyDictionary(itk::MetaDataDictionary &fromDict, itk::MetaDataDictionary &toDict)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::MetaDataDictionary DictionaryType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
DictionaryType::ConstIterator itr = fromDict.Begin();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
DictionaryType::ConstIterator end = fromDict.End();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
typedef itk::MetaDataObject< std::string > MetaDataStringType;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
while (itr != end)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::MetaDataObjectBase::Pointer entry = itr->second;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
MetaDataStringType::Pointer entryvalue =<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
dynamic_cast<MetaDataStringType *>(entry.GetPointer());<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
if (entryvalue)<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
{<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string tagkey = itr->first;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
std::string tagvalue = entryvalue->GetMetaDataObjectValue();<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
itk::EncapsulateMetaData<std::string>(toDict, tagkey, tagvalue);<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
++itr;<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
}<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<o:p class=""></o:p></div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
El jue., 30 de mar. de 2017 a la(s) 11:25, Lowekamp, Bradley (NIH/NLM/LHC) [C] [via ITK - Users] <[hidden email]> escribió:<o:p class=""></o:p></div>
</div>
<blockquote style="border-style: none none none solid; border-left-color: rgb(204, 204, 204); border-left-width: 1.5pt; padding: 0in 0in 0in 12pt; margin-top: 5pt; margin-bottom: 5pt;" class="">
<p class="MsoNormal" style="margin: 0in 0in 12pt; font-size: 12pt; font-family: 'Times New Roman';">
Hello,<span class="Apple-converted-space"> </span><br class="">
<br class="">
Writing correct DICOM continues to be a struggle with SimpleITK and ITK. It is generally recommended to directly use GDCM or DCMTK to write a proper DICOM series.<span class="Apple-converted-space"> </span><br class="">
<br class="">
SimpleITK tries to keep things, well, simple and straight forward. But ITK ties to do some smart things, which get in the way for certain uses with SimpleITK. We are trying to document and develop a nominal set of DICOM output operations that work in SimpleITK.<span class="Apple-converted-space"> </span><br class="">
<br class="">
Do you have working C++ code that works for your intended operation? Can you share a small section of code which does what you expect it C++?<span class="Apple-converted-space"> </span><br class="">
<br class="">
Thank,<span class="Apple-converted-space"> </span><br class="">
Brad<span class="Apple-converted-space"> </span><br class="">
<br class="">
<o:p class=""></o:p></p>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 12pt; font-family: 'Times New Roman';" class="">
<br class="">
> On Mar 30, 2017, at 8:49 AM, Matias <<a href="http://user/SendEmail.jtp?type=node&node=38052&i=0" target="_blank" style="color: purple; text-decoration: underline;" class="">[hidden email]</a>> wrote:<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> Hi,<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> I've been dealing with ITK for years in C++ and now I would need to use<span class="Apple-converted-space"> </span><br class="">
> SimpleITK and C# as far as I can in a new proyect.<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> Is the SimpleITK SeriesWriter working for Dicom Files? Last time I tried to<span class="Apple-converted-space"> </span><br class="">
> use it I had problems with the DicomTags, these would not copy or there was<span class="Apple-converted-space"> </span><br class="">
> no method to copy the tags to the resulting slices.<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> Currently, I read a volume of slices, apply rotation and then I need to<span class="Apple-converted-space"> </span><br class="">
> write the resulting image as another set of slices AND keeping tag<span class="Apple-converted-space"> </span><br class="">
> information such as patient name, etc.<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> Thank you,<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> Matias.<span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> --<span class="Apple-converted-space"> </span><br class="">
> View this message in context:<span class="Apple-converted-space"> </span><a href="http://itk-users.7.n7.nabble.com/SimpleITK-Serieswriter-and-DicomTags-tp38050.html" target="_blank" style="color: purple; text-decoration: underline;" class="">http://itk-users.7.n7.nabble.com/SimpleITK-Serieswriter-and-DicomTags-tp38050.html</a><br class="">
> Sent from the ITK - Users mailing list archive at <a href="http://nabble.com" class="">
Nabble.com</a>.<span class="Apple-converted-space"> </span><br class="">
> _____________________________________<span class="Apple-converted-space"> </span><br class="">
> Powered by<span class="Apple-converted-space"> </span><a href="http://www.kitware.com/" target="_blank" style="color: purple; text-decoration: underline;" class="">www.kitware.com</a><span class="Apple-converted-space"> </span><br class="">
><span class="Apple-converted-space"> </span><br class="">
> Visit other Kitware open-source projects at<span class="Apple-converted-space"> </span><br class="">
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><span class="Apple-converted-space"> </span><br class="">
> Kitware offers ITK Training Courses, for more information visit:<span class="Apple-converted-space"> </span><br class="">
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