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Hello,
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<div class="">I am not sure what you mean by you “re-arranged the coronal scan to be in the axial view”. I hope you did it in a way to preserve the meta-data and the direction cosine matrix. You should be able to do this all in what step with the resample
filter.</div>
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<div class="">You need to use the input’s direction matrix for the OutputDirection of the resample filter. Next set the OutputSize, and then correctly calculate the OutputSpacing so that the result has the same physical extent as the input.</div>
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<div class="">If you need further help, perhaps sharing a snip-it of code would help.</div>
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<div class="">HTH,</div>
<div class="">Brad</div>
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<div class="">On Jun 19, 2016, at 10:22 PM, Sara Gh <<a href="mailto:sg.ele.eng@gmail.com" class="">sg.ele.eng@gmail.com</a>> wrote:</div>
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<div dir="ltr" class="">Hello experts,
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<div class="">I have two MRI scans: axial (256x256x56) and coronal (68x256x256). For both of them, slice thickness and slice gap parameters are 2 and 1, respectively.</div>
<div class="">I have re-arranged the coronal scan to be in the axial view. Therefore, the new coronal scan (with the axial view) is 256x256x68.</div>
<div class="">Now, I am trying to use SimpleITK to resize/upsample both scans to 256x256x256. Considering
<b class="">slice gap and slice thickness parameters</b>, how can I perform this 3D-resizing in SimpleITK?<br class="">
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<div class="">Thanks,</div>
<div class="">Sara Gh</div>
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