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<p class="MsoNormal">Dear all,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I am having difficulties with the use of itk::TriangleMeshToBinaryImageFilter on a cube mesh. There are many mislabled voxel at the surface of the cube (see attached images). The source code follows (Usage MeshToImageTest cube1.vtk cube1.nii
0.175).<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you in advance for your help,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Silvain Bériault<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">#include</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white"><itkImage.h></span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">#include</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white"><itkMesh.h></span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">#include</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white"><itkMeshFileReader.h></span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">#include</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white"><itkTriangleMeshToBinaryImageFilter.h></span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">#include</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white"><itkImageFileWriter.h></span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">#include</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white"><string></span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">typedef</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">itk</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">Image</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">short</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">,
3> </span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">VolumeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">typedef</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">itk</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">Mesh</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">double</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">>
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">int</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#6F008A;background:white;mso-highlight:white">main</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">int</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">argc</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">,
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">char</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">*
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">argv</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[])<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">{<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">if</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> (</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">argc</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
!= 4)<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> {<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">std</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><i><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">cerr</span></i><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
<< </span><span style="font-size:9.5pt;font-family:Consolas;color:#A31515;background:white;mso-highlight:white">"Usage: MeshToImageTest inputMeshPath outputVolumePath spacing"</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
<< </span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">std</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><i><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">endl</span></i><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> }<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">std</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">string</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">inputFile</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">argv</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[1];<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">std</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">string</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">outputFile</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">argv</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2];<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">VolumeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">SpacingType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">.</span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">Fill</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><i><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">atof</span></i><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">argv</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[3]));<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> </span><span style="font-size:9.5pt;font-family:Consolas;color:green;background:white;mso-highlight:white">//
read input mesh</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">typedef</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">itk</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshFileReader</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">>
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshReaderType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshReaderType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">Pointer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">reader</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshReaderType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">New</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">reader</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetFileName</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">inputFile</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">reader</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">Update</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">Pointer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">mesh</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">reader</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">GetOutput</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:green;background:white;mso-highlight:white">// Compute OutputVolume's origin and size based on the mesh's bounding box + padding</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">auto</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">&
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">mesh</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">GetBoundingBox</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">()-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">GetBounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">const</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">int</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> = 10;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">VolumeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">PointType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">origin</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">origin</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[0] =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[0] -
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> *
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[0];<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">origin</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[1] =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2] -
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> *
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[1];<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">origin</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2] =
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[4] -
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> *
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2];<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">VolumeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">SizeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">size</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">size</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[0] = (</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[1]
- </span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[0]) /
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[0] + 2*</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">size</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[1] = (</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[3]
- </span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2]) /
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[1] + 2*</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">size</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2] = (</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[5]
- </span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">bounds</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[4]) /
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">[2] + 2*</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">PADDING</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:green;background:white;mso-highlight:white">// perform conversion between mesh to volume</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">typedef</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">itk</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">TriangleMeshToBinaryImageFilter</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">,
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">VolumeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">>
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshToImageFilter</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshToImageFilter</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">Pointer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">MeshToImageFilter</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">New</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetInput</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">mesh</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetOrigin</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">origin</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetSpacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">spacing</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetSize</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">size</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetInsideValue</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(1);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetOutsideValue</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(0);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">Update</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:green;background:white;mso-highlight:white">// write output volume</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:blue;background:white;mso-highlight:white">typedef</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">itk</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">ImageFileWriter</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"><</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">VolumeType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">>
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">ImageWriterType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">;<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">ImageWriterType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">Pointer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">writer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white"> =
</span><span style="font-size:9.5pt;font-family:Consolas;color:#216F85;background:white;mso-highlight:white">ImageWriterType</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">::</span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">New</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">writer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetInput</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">meshToVol</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">GetOutput</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">());<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">writer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">SetFileName</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">(</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">outputFile</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">);<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">
</span><span style="font-size:9.5pt;font-family:Consolas;color:navy;background:white;mso-highlight:white">writer</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">-></span><span style="font-size:9.5pt;font-family:Consolas;color:#880000;background:white;mso-highlight:white">Update</span><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">();<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:9.5pt;font-family:Consolas;color:black;background:white;mso-highlight:white">}</span><o:p></o:p></p>
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