<div dir="ltr">you can also do ( in R )<div><br></div><div>install.packages("devtools")</div><div>library(devtools)</div><div><span style="color:rgb(51,51,51);font-family:'Helvetica Neue',Helvetica,'Segoe UI',Arial,freesans,sans-serif;font-size:13.63636302948px;line-height:20.3636360168457px">install_github("stnava/ANTsR") </span><br>
</div><div><span style="color:rgb(51,51,51);font-family:'Helvetica Neue',Helvetica,'Segoe UI',Arial,freesans,sans-serif;font-size:13.63636302948px;line-height:20.3636360168457px">library(ANTsR)</span></div>
<div><span style="color:rgb(51,51,51);font-family:'Helvetica Neue',Helvetica,'Segoe UI',Arial,freesans,sans-serif;font-size:13.63636302948px;line-height:20.3636360168457px">img<-antsImageRead("image.nii.gz",3)</span></div>
<div><span style="color:rgb(51,51,51);font-family:'Helvetica Neue',Helvetica,'Segoe UI',Arial,freesans,sans-serif;font-size:13.63636302948px;line-height:20.3636360168457px">antsImageWrite(img,'temp.nii.gz') </span></div>
<div><span style="color:rgb(51,51,51);font-family:'Helvetica Neue',Helvetica,'Segoe UI',Arial,freesans,sans-serif;font-size:13.63636302948px;line-height:20.3636360168457px"><br></span></div><div><font color="#333333" face="Helvetica Neue, Helvetica, Segoe UI, Arial, freesans, sans-serif"><span style="line-height:20.3636360168457px">it's itk underneath</span></font></div>
</div><div class="gmail_extra"><br clear="all"><div><div><br></div>brian<br><div><br></div><div><br></div></div>
<br><br><div class="gmail_quote">On Thu, Sep 4, 2014 at 9:09 AM, Arman Eshaghi <span dir="ltr"><<a href="mailto:arman.eshaghi@gmail.com" target="_blank">arman.eshaghi@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr"><div style="font-family:arial,sans-serif;font-size:12.727272033691406px">Thanks Brad and Matt, just wanted to read and write files with ITK in R. SITK works fine on Linux.</div><div style="font-family:arial,sans-serif;font-size:12.727272033691406px">
<br></div><div style="font-family:arial,sans-serif;font-size:12.727272033691406px">All the best,</div><div style="font-family:arial,sans-serif;font-size:12.727272033691406px">Arman</div><div style="font-family:arial,sans-serif;font-size:12.727272033691406px">
<br></div><div style="font-family:arial,sans-serif;font-size:12.727272033691406px">ps Just found another package (Rcpp) that may be useful for this as well</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra">
<br><br><div class="gmail_quote">
On Thu, Sep 4, 2014 at 5:28 PM, Bradley Lowekamp <span dir="ltr"><<a href="mailto:blowekamp@mail.nih.gov" target="_blank">blowekamp@mail.nih.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hello,<br>
<br>
What are you looking to do with R and ITK?<br>
<br>
The SimpleITK 0.8.0 release works well with R and the SWIG 2.0.11 version and is tested on linux and OSX. There are some issue with building R on windows that have not been addressed. Please let us know if you have further questions about getting this built.<br>
<br>
Good luck,<br>
Brad<br>
<div><div><br>
On Sep 4, 2014, at 8:44 AM, Matt McCormick <<a href="mailto:matt.mccormick@kitware.com" target="_blank">matt.mccormick@kitware.com</a>> wrote:<br>
<br>
> Hi Arman,<br>
><br>
> Since WrapITK uses SWIG, generating an R interface should be possible,<br>
> but I do not know anyone who has tried it recently.<br>
><br>
> SimpleITK uses SWIG and the R interface is enabled [1].<br>
><br>
> HTH,<br>
> Matt<br>
><br>
> [1] <a href="http://www.itk.org/Wiki/SimpleITK/GettingStarted#R_installation" target="_blank">http://www.itk.org/Wiki/SimpleITK/GettingStarted#R_installation</a><br>
><br>
> On Thu, Sep 4, 2014 at 3:39 AM, Arman Eshaghi <<a href="mailto:arman.eshaghi@gmail.com" target="_blank">arman.eshaghi@gmail.com</a>> wrote:<br>
>> Hi,<br>
>><br>
>> I'm wondering whether this proposal below from 2009 had any progresses<br>
>> regarding the integration of R statistics with ITK?<br>
>><br>
>> <a href="http://www.itk.org/Wiki/Proposals:Integration_with_R_Language#R_Interface_Examples_with_other_languages" target="_blank">http://www.itk.org/Wiki/Proposals:Integration_with_R_Language#R_Interface_Examples_with_other_languages</a><br>
>><br>
>> Thanks<br>
>> Arman<br>
>><br>
>> _____________________________________<br>
>> Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
>><br>
>> Visit other Kitware open-source projects at<br>
>> <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
>><br>
>> Kitware offers ITK Training Courses, for more information visit:<br>
>> <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
>><br>
>> Please keep messages on-topic and check the ITK FAQ at:<br>
>> <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
>><br>
>> Follow this link to subscribe/unsubscribe:<br>
>> <a href="http://public.kitware.com/mailman/listinfo/insight-users" target="_blank">http://public.kitware.com/mailman/listinfo/insight-users</a><br>
>><br>
> _____________________________________<br>
> Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
><br>
> Visit other Kitware open-source projects at<br>
> <a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
><br>
> Kitware offers ITK Training Courses, for more information visit:<br>
> <a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
><br>
> Please keep messages on-topic and check the ITK FAQ at:<br>
> <a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
><br>
> Follow this link to subscribe/unsubscribe:<br>
> <a href="http://public.kitware.com/mailman/listinfo/insight-users" target="_blank">http://public.kitware.com/mailman/listinfo/insight-users</a><br>
<br>
</div></div></blockquote></div><br></div>
</div></div><br>_____________________________________<br>
Powered by <a href="http://www.kitware.com" target="_blank">www.kitware.com</a><br>
<br>
Visit other Kitware open-source projects at<br>
<a href="http://www.kitware.com/opensource/opensource.html" target="_blank">http://www.kitware.com/opensource/opensource.html</a><br>
<br>
Kitware offers ITK Training Courses, for more information visit:<br>
<a href="http://www.kitware.com/products/protraining.php" target="_blank">http://www.kitware.com/products/protraining.php</a><br>
<br>
Please keep messages on-topic and check the ITK FAQ at:<br>
<a href="http://www.itk.org/Wiki/ITK_FAQ" target="_blank">http://www.itk.org/Wiki/ITK_FAQ</a><br>
<br>
Follow this link to subscribe/unsubscribe:<br>
<a href="http://public.kitware.com/mailman/listinfo/insight-users" target="_blank">http://public.kitware.com/mailman/listinfo/insight-users</a><br>
<br></blockquote></div><br></div>