<div dir="ltr"><div class="gmail_default" style="font-family:verdana,sans-serif;font-size:small">Then you most likely have some problems with how libraries are compiled/built. Can you successfully run examples that come with ITK and VTK libraries? If not, you first need to take care of those issues.</div>

</div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Apr 29, 2014 at 1:01 PM, Роман Глуховский <span dir="ltr"><<a href="mailto:roman_glu@mail.ru" target="_blank">roman_glu@mail.ru</a>></span> wrote:<br>

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<div>I try this example, but i get also a segmentation fault<br><br><br>Tue, 29 Apr 2014 12:04:45 +0200 от Dženan Zukić <<a href="mailto:dzenanz@gmail.com" target="_blank">dzenanz@gmail.com</a>>:<div><div class="h5">

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                        <div><div dir="ltr"><div style="font-family:verdana,sans-serif;font-size:small">Have you seen this example?</div><div><font face="verdana, sans-serif"><a href="http://vtk.org/Wiki/VTK/ExamplesBoneYard/Cxx/VolumeRendering/itkVtkImageConvert" target="_blank">http://vtk.org/Wiki/VTK/ExamplesBoneYard/Cxx/VolumeRendering/itkVtkImageConvert</a></font><br>



</div></div><div><br><br><div>On Tue, Apr 29, 2014 at 10:45 AM, Роман Глуховский <span dir="ltr"><<a href="https://e.mail.ru/compose/?mailto=mailto%3aroman_glu@mail.ru" target="_blank">roman_glu@mail.ru</a>></span> wrote:<br>



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I change the part of my programm to load the ImageSeries,<br></div></div><div><div><div><div><div><br>    typedef itk::Image<unsigned char, 3> ImageType;<br>    typedef itk::ImageSeriesReader< ImageType >  ReaderType;<br>



    ReaderType::Pointer reader = ReaderType::New();<br>    typedef itk::GDCMImageIO ImageIOType;<br>    ImageIOType::Pointer dicomIO = ImageIOType::New();<br>    reader->SetImageIO(dicomIO);<br><br>    typedef itk::GDCMSeriesFileNames NamesGeneratorType;<br>



    NamesGeneratorType::Pointer nameGenerator = NamesGeneratorType::New();<br>    nameGenerator->SetDirectory("Folder");<br><br><br>    // get series IDs<br>    typedef std::vector<std::string> SeriesIdContainer;<br>



    const SeriesIdContainer &seriesUID = nameGenerator->GetSeriesUIDs();<br><br>    // get dicom series<br>    typedef std::vector<std::string> FileNamesContainer;<br>    FileNamesContainer fileName;<br>    fileName=nameGenerator->GetFileNames(seriesUID.begin()->c_str());<br>



    reader->SetFileNames(fileName);<br><br>    // pull reader<br>    reader->Update();<br><br>But my programm crash again at the same position, when i try to convert to vtk.<br><br><br>Sat, 26 Apr 2014 07:12:55 +0800 (CST) от 关红彦 <<a href="https://e.mail.ru/compose/?mailto=mailto%3aghy@tellyes.com" target="_blank">ghy@tellyes.com</a>>:<br>




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                        <div><div style="line-height:1.7;font-size:14px;font-family:arial"><br><br>I just wonder if your 3D medical images save as a file or a series of images.<div>If you save  them to a series of files,  you shouldn't  do this: </div>



<div style="color:rgb(255,0,0)"><span style="color:rgb(255,0,0)"> </span><span style="font-family:monospace;font-size:12px;line-height:22px;color:rgb(255,0,0)">#include <</span><a href="http://www.itk.org/Doxygen45/html/itkImageFileReader_8h_source.html" style="color:rgb(255,0,0);font-weight:bold;text-decoration:none;font-family:monospace;font-size:12px;line-height:22px" target="_blank">itkImageFileReader.h</a><span style="font-family:monospace;font-size:12px;line-height:22px;color:rgb(255,0,0)">></span></div>



<div><span style="color:rgb(255,0,0)">reader->SetFileName( "DICOM-File" );</span> <span style="color:rgb(255,0,0)"></span></div><div><font color="#ff0000"><br></font></div><div><font color="#ff0000">but this:</font></div>



<div><span style="font-family:monospace;font-size:12px;line-height:22px"></span><span style="color:rgb(0,0,255)"><span style="font-family:monospace;font-size:12px;line-height:22px;color:rgb(0,0,255)">#include <</span><a href="http://www.itk.org/Doxygen45/html/itkImageSeriesReader_8h_source.html" style="color:rgb(0,0,255);font-weight:bold;text-decoration:none;font-family:monospace;font-size:12px;line-height:22px" target="_blank">itkImageSeriesReader.h</a><span style="font-family:monospace;font-size:12px;line-height:22px;color:rgb(0,0,255)">></span><span style="color:rgb(0,0,255)"> </span><font color="#ff0000"><br>



</font><table style="font-size:12px;line-height:22px;font-family:'Lucida Grande',Verdana,Geneva,Arial,sans-serif;border-spacing:0px;padding:0px;color:rgb(0,0,0);text-align:start"><tbody><tr><td style="background-color:rgb(249,250,252);border:none;margin:4px;padding:1px 0px 0px 8px;white-space:nowrap;color:rgb(0,0,255)" align="right" valign="top">



void </td><td style="background-color:rgb(249,250,252);border:none;margin:4px;padding:1px 0px 0px 8px;width:1607px" valign="bottom"><a href="http://www.itk.org/Doxygen45/html/classitk_1_1ImageSeriesReader.html#aedb3ea58c4bb4975f46ef9c85a855aa6" style="color:rgb(0,0,255);font-weight:bold;text-decoration:none" target="_blank">SetFileNames</a><span style="color:rgb(0,0,255)"> (const </span><a href="http://www.itk.org/Doxygen45/html/classitk_1_1ImageSeriesReader.html#a2efd0b86373c161229f7984b9ea4af56" style="color:rgb(0,0,255);font-weight:bold;text-decoration:none" target="_blank">FileNamesContainer</a><span style="color:rgb(0,0,255)"> &name)</span></td>



</tr></tbody></table></span><table style="border-spacing:0px;line-height:22px;text-align:start;font-size:12px;font-family:'Lucida Grande',Verdana,Geneva,Arial,sans-serif;padding:0px"><tbody><tr><td style="background-color:rgb(249,250,252);border:none;margin:4px;padding:1px 0px 0px 8px;width:1607px" valign="bottom">



</td></tr></tbody></table>This class can read a series of *.DCM files that are using a lot in the hospital.<br><div><br></div><br>At 2014-04-25 20:52:20,"Роман Глуховский" <<a href="https://e.mail.ru/compose/?mailto=mailto%3aroman_glu@mail.ru" target="_blank">roman_glu@mail.ru</a>> wrote:<br>



 <blockquote style="padding-left:1ex;margin:0px 0px 0px 0.8ex;border-left:#ccc 1px solid">Hi vtkusers,<br><br>i load a DICOM-file with itk and after that i would like to display the file with vtk. <br><br>If I compile the programm I have no error. When i start the programm, its crashed and <br>



i get a return value "0".<br><br>In the debug-mode i get a "segmentation fault" and the programm stops at this position<br><br>----------> m_Importer->SetPropagateUpdateExtentCallback(m_Exporter->GetPropagateUpdateExtentCallback());<br>



<br>in the "itkImageToVTKImageFilter_hxx". <br><br>Here is my code:<br><br>        typedef itk::Image<unsigned char, 3> VisualizingImageType;<br>        typedef itk::ImageFileReader< VisualizingImageType >  ReaderType;<br>



        ReaderType::Pointer reader = ReaderType::New();<br>        reader->SetFileName( "DICOM-File" );<br>        typedef itk::GDCMImageIO ImageIOType;<br><br>        ImageIOType::Pointer gdcmImageIO = ImageIOType::New();<br>



<br>        reader->SetImageIO( gdcmImageIO );<br>        reader->Update();<br>        reader->GetOutput()->Print(std::cout);<br><br>        vtkSmartPointer<vtkRenderWindow> renWin = vtkSmartPointer<vtkRenderWindow>::New();<br>



        vtkSmartPointer<vtkRenderer> ren1 = vtkSmartPointer<vtkRenderer>::New();<br>        ren1->SetBackground(0.5f,0.5f,1.0f);<br><br>        renWin->AddRenderer(ren1);<br>        renWin->SetSize(1280,1024);<br>



        vtkSmartPointer<vtkRenderWindowInteractor> iren =<br>            vtkSmartPointer<vtkRenderWindowInteractor>::New();<br>        iren->SetRenderWindow(renWin);<br>        renWin->Render(); // make sure we have an OpenGL context.<br>



<br>        typedef itk::ImageToVTKImageFilter<VisualizingImageType> itkVtkConverter;<br>        itkVtkConverter::Pointer conv=itkVtkConverter::New();<br>        conv->GetExporter()->SetInput(reader->GetOutput());<br>



        conv->GetImporter()->Update();<br>        conv->GetImporter()->GetOutput()->Print(std::cout);<br><br>        vtkImageViewer * viewer =vtkImageViewer::New();<br>        vtkRenderWindowInteractor * renderWindowInteractor =<br>



        vtkRenderWindowInteractor::New();<br>        viewer->SetupInteractor( renderWindowInteractor );<br>        viewer->SetInputData( conv->GetImporter()->GetOutput() );<br>        viewer->SetZSlice( 0 ); // <-- Slice selection<br>



        viewer->Render();<br>        renderWindowInteractor->Start();<br><br>        viewer->Delete();<br>        renderWindowInteractor->Delete();<br>        conv->GetImporter()->Delete();<br><br><br>Thank you for your help<br>



<br>Roman<br>
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<br>-- <br>Роман Глуховский<br></font></span></div>
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