<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">Hello Chao,<div><br></div><div>The "Fatal Python error: PyThreadState_Get: no current thread" error, frequently occurs when the SimpleITK binary was compiled against an incompatible version of python to what you are running. </div><div><br></div><div>What python distribution are you using? Do you have any third party python interpreters installed? (Your error message below indicates that you are not using the system python!)</div><div><br></div><div><br></div><div>On OSX this frequently occurs when there is a Third Party version of Python installed. The distributed binary are not compatible with Enthought or Mac Ports installation of python. It's work with the system python and the python distributed from <a href="http://python.org">python.org</a>.</div><div><br></div><div>Regarding compiling:</div><div><br></div><div>1) I recommend disabling the languages you don't need. Such as R.</div><div>2) For python review which executable, library, and headers are used. Ensure that they are consistent with the version and installation of python you will be using.</div><div><br></div><div>hope that helps,</div><div>Brad</div><div><br></div><div><div><div>On Apr 16, 2014, at 5:43 PM, Chao Wang <<a href="mailto:dynastywang1010@gmail.com">dynastywang1010@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr">Hi, Dave,<div><br></div><div>I gave up building it by myself. For the binary installation on Mac, I did 'sudo easy_install SimplyITK'. </div><div><br></div><div>I believe it is successfully installed. But when I entered python, it gave me an error like the above. </div>
<div><br></div><div>Please direct me to where it can be solved. </div><div><br></div><div>Thanks,</div><div><br></div><div>Chao</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Apr 16, 2014 at 2:28 PM, David Welch <span dir="ltr"><<a href="mailto:david.m.welch@gmail.com" target="_blank">david.m.welch@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><font face="arial, helvetica, sans-serif" style="">Hi Chao,</font><div><font face="arial, helvetica, sans-serif" style=""><br>
</font></div><div><font face="arial, helvetica, sans-serif" style="">Let's keep this on the mailing list. </font><span style="font-family:arial,helvetica,sans-serif">I assumed from your original message you were trying to build with R wrapping, not Python. That was probably your original problem - just turn off R_WRAPPING (or whatever it is in the CMake GUI).</span></div>
<div><font face="arial, helvetica, sans-serif" style=""><br></font></div><div><font face="arial, helvetica, sans-serif" style="">For your first error: if you Google "<span style="font-size:13px">Fatal Python error: PyThreadState_Get: no current thread" there are a TON of hits. What have you tried?</span></font></div>
<div><br></div><div>Ubuntu is a different issue, so let's take it one OS at a time.</div><div class="gmail_extra"><br clear="all"><div><div dir="ltr">Cheers,<div>Dave<br></div></div></div><div><div class="h5">
<br><br><div class="gmail_quote">On Wed, Apr 16, 2014 at 2:47 PM, Chao Wang <span dir="ltr"><<a href="mailto:dynastywang1010@gmail.com" target="_blank">dynastywang1010@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">I also tried in ubuntu, after sudo easy_install SimpleITK, and <span style="background-color:rgb(148,33,147);color:rgb(255,251,0);font-family:Menlo;font-size:13px">import SimpleITK as sitk,</span><div><span style="background-color:rgb(148,33,147);color:rgb(255,251,0);font-family:Menlo;font-size:13px"><br>
</span></div><div><br></div><div class="gmail_extra">Python still cannot find the package. </div><div class="gmail_extra"><br></div><div class="gmail_extra">Thanks,</div><div class="gmail_extra"><br></div><div class="gmail_extra">
Chao<div><br><br><div class="gmail_quote">On Wed, Apr 16, 2014 at 11:52 AM, Chao Wang <span dir="ltr"><<a href="mailto:dynastywang1010@gmail.com" target="_blank">dynastywang1010@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex; position: static; z-index: auto;">
<div dir="ltr"><div><br></div>Hi, David, <div><br></div><div>I switched to binary install and it was successful, I hope. </div><div><br></div><div>But, when I open python and tried to import SimpleITK as <span style="background-color:rgb(148,33,147);color:rgb(255,251,0);font-family:Menlo;font-size:13px">import SimpleITK as sitk</span></div><div style="margin: 0px; font-size: 13px; font-family: Menlo; color: rgb(255, 251, 0); background-color: rgb(148, 33, 147);">sitk</div><div style="margin: 0px; font-size: 13px; font-family: Menlo; color: rgb(255, 251, 0); background-color: rgb(148, 33, 147);">Fatal Python error: PyThreadState_Get: no current thread</div><div style="margin: 0px; font-size: 13px; font-family: Menlo; color: rgb(255, 251, 0); background-color: rgb(148, 33, 147);">Abort trap: 6</div><div style="margin: 0px; font-size: 13px; font-family: Menlo; color: rgb(255, 251, 0); background-color: rgb(148, 33, 147);">
<br></div><div style="margin: 0px; font-size: 13px; font-family: Menlo; color: rgb(255, 251, 0); background-color: rgb(148, 33, 147);"><br></div><div class="gmail_extra"><br><div class="gmail_extra">Process: Python [90787]</div><div class="gmail_extra">
Path: /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python</div><div class="gmail_extra">Identifier: Python</div><div class="gmail_extra">Version: 2.7.3 (2.7.3)</div>
<div class="gmail_extra">Code Type: X86-64 (Native)</div><div class="gmail_extra">Parent Process: bash [90730]</div><div class="gmail_extra">Responsible: Terminal [200]</div><div class="gmail_extra">User ID: 501</div>
<div class="gmail_extra"><br></div><div class="gmail_extra">Date/Time: 2014-04-16 11:51:19.463 -0700</div><div class="gmail_extra">OS Version: Mac OS X 10.9.2 (13C64)</div><div class="gmail_extra">Report Version: 11</div>
<div class="gmail_extra">Anonymous UUID: D20752B2-FC7D-334A-7483-EAC1C469DF11</div><div class="gmail_extra"><br></div><div class="gmail_extra">Sleep/Wake UUID: 619C0566-6D47-4938-8E49-BD544C13CF52</div><div class="gmail_extra">
<br></div><div class="gmail_extra">Crashed Thread: 0 Dispatch queue: com.apple.main-thread</div><div class="gmail_extra"><br></div><div class="gmail_extra">Exception Type: EXC_CRASH (SIGABRT)</div><div class="gmail_extra">
Exception Codes: 0x0000000000000000, 0x0000000000000000</div><div class="gmail_extra"><br></div><div class="gmail_extra">Application Specific Information:</div><div class="gmail_extra">abort() called</div><div><br></div>
<div>
I wonder if the path is wrong or something else happened? </div><div><br></div><div><br></div><div>Thanks,</div><div class="gmail_extra"><br></div><div class="gmail_extra"><br></div>Chao<br><br><div class="gmail_quote"><div>
<div>On Wed, Apr 16, 2014 at 9:37 AM, David Welch <span dir="ltr"><<a href="mailto:david.m.welch@gmail.com" target="_blank">david.m.welch@gmail.com</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div><div dir="ltr">Hi Chao,<div>
<br></div><div>It looks like your path to the R framework is incorrect in your CMake build. Can you email the values for R in your CMakeCache file?</div>
<div> <br clear="all"><div><div dir="ltr">
Cheers,<div>Dave<br></div></div></div>
</div></div>
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<br></blockquote></div><span><font color="#888888"><br><br clear="all"><div><br></div>-- <br>Chao Wang
</font></span></div></div>
</blockquote></div><br><br clear="all"><div><br></div></div><span><font color="#888888">-- <br>Chao Wang
</font></span></div></div>
</blockquote></div><br></div></div></div></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br>Chao Wang
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