<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">JC,<div><br></div><div>ITK module don't support compilation outside of ITK.</div><div><br></div><div>However, many of ITK modules don't actually need to be compiled or configured, just included.</div><div><br></div><div>In my IASEM Slicer module I have a couple branches which add some of my ITK Modules in a "External" directory as a git submodule. This has work pretty good for my cases, just doing some conditional cmake include directories.</div><div><br></div><div>I'd like to avoid copying files. What do you think of using sub-modules for ITK extensions in Slicer extension? Any other options/suggestion for establishing best practice recommendations for using Slicer and ITK modules together?</div><div><br></div><div>Brad</div><div><br><div><div>On Jan 16, 2014, at 1:18 PM, Jean-Christophe Fillion-Robin <<a href="mailto:jchris.fillionr@kitware.com">jchris.fillionr@kitware.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><div dir="ltr"><div><div><div><div>Hi Bill, <br><br></div><div>This is great.<br></div><div><br></div>Would it be possible to update the SkullStripper extension so that it externally build the ITK remote module and use it ? Alternatively, you could copy the files "itkStripTsImageFilter.*" specifying from which revision of the remote module they are based of. Shell script to do so should probably be generalized and made available ... <br>
<br></div>That would avoid code duplication and ease maintenance.<br><br></div>Thanks<br></div>Jc<br><div><br></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Jan 16, 2014 at 12:28 PM, Bill Lorensen <span dir="ltr"><<a href="mailto:bill.lorensen@gmail.com" target="_blank">bill.lorensen@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">A Skull Stripping filter that removes face/skull from MRI data and<br>
creates a mask for the brain. This is a common preprocessing step for<br>
segmenting MRI brains and their contents.<br>
<br>
NOTE: This algorithm is also availiable as a Slicer extension:<br>
<a href="https://www.slicer.org/slicerWiki/index.php/Documentation/4.2/Extensions" target="_blank">https://www.slicer.org/slicerWiki/index.php/Documentation/4.2/Extensions</a><br>
<br>
Following the process here:<br>
<a href="http://www.itk.org/Wiki/ITK/Policy_and_Procedures_for_Adding_Remote_Modules" target="_blank">http://www.itk.org/Wiki/ITK/Policy_and_Procedures_for_Adding_Remote_Modules</a><br>
<br>
1) A Skull-Stripping Filter for ITK Bauer S., Fejes T., Reyes M.<br>
<a href="http://www.insight-journal.org/browse/publication/859" target="_blank">http://www.insight-journal.org/browse/publication/859</a><br>
<br>
2) Nightly Dashboard<br>
<a href="http://open.cdash.org/index.php?project=Insight&filtercount=2&showfilters=1&filtercombine=and&field1=site/string&compare1=63&value1=BillsAmazon&field2=buildname/string&compare2=63&value2=SkullStrip" target="_blank">http://open.cdash.org/index.php?project=Insight&filtercount=2&showfilters=1&filtercombine=and&field1=site/string&compare1=63&value1=BillsAmazon&field2=buildname/string&compare2=63&value2=SkullStrip</a><br>
<br>
3) Gerrit patch<br>
<a href="http://review.source.kitware.com/#/c/14054/" target="_blank">http://review.source.kitware.com/#/c/14054/</a><br>
<br>
4) Notify list<br>
<br>
Bill<br>
<br>
<br>
--<br>
Unpaid intern in BillsBasement at noware dot com<br>
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_______________________________________________<br>Powered by <a href="http://www.kitware.com">www.kitware.com</a><br><br>Visit other Kitware open-source projects at<br><a href="http://www.kitware.com/opensource/opensource.html">http://www.kitware.com/opensource/opensource.html</a><br><br>Kitware offers ITK Training Courses, for more information visit:<br>http://kitware.com/products/protraining.php<br><br>Please keep messages on-topic and check the ITK FAQ at:<br>http://www.itk.org/Wiki/ITK_FAQ<br><br>Follow this link to subscribe/unsubscribe:<br>http://www.itk.org/mailman/listinfo/insight-developers<br></blockquote></div><br></div></body></html>