<div dir="ltr"><div><div>Hi,<br></div><div></div>you should replace the vtkImageNoiseSource for a VTK file type reader. The following [1] example ilustrates how to proceed.<br><br>In the example Matt pointed, the VTK image source is vtkImageNoiseSource, which creates an image filled with noise. <br>
<br>So you would connect the output of your reader to the connector:<br><pre class=""><font>std<span class="">::</span><span class="">string</span> inputFilename <span class="">=</span> argv<span class="">[</span><span class="">1</span><span class="">]</span><span class="">;</span>
 
<span class="">// Get all data from the file</span>
vtkSmartPointer<span class=""><</span>vtkGenericDataObjectReader<span class="">></span> reader <span class="">=</span> 
      vtkSmartPointer<span class=""><</span>vtkGenericDataObjectReader<span class="">></span><span class="">::</span><span class="">New</span><span class="">(</span><span class="">)</span><span class="">;</span>
reader<span class="">-</span><span class="">></span>SetFileName<span class="">(</span>inputFilename.<span class="">c_str</span><span class="">(</span><span class="">)</span><span class="">)</span><span class="">;<br></span></font></pre>
<pre class=""><font><span class="">connector->SetInput(reader->GetOutput());<br></span></font></pre><br></div><div>HTH,<br>JON HAITZ<br><br><br>[1] <a href="http://www.vtk.org/Wiki/VTK/Examples/Cxx/IO/GenericDataObjectReader">www.vtk.org/Wiki/VTK/Examples/Cxx/IO/GenericDataObjectReader</a><br>
<div><div><div class="gmail_extra"><br><br><br><br><div class="gmail_quote">On 19 November 2013 08:48, azmagillian <span dir="ltr"><<a href="mailto:xrysafenia.malliastolidou@gmail.com" target="_blank">xrysafenia.malliastolidou@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Matt thank you so much! I think that's what i need but for 3 dimensions<br>
<br>
so below at the code i should change Image<double,2> to Image<double,3>?<br>
and where should i put my file .vtk input ??<br>
<br>
<br>
#include "itkVTKImageToImageFilter.h"<br>
20<br>
21 #include "vtkImageNoiseSource.h"<br>
22 #include "vtkSmartPointer.h"<br>
23<br>
24 int itkVTKImageToImageFilterTest(int, char*[])<br>
25 {<br>
26   typedef itk::Image<double, 2>                 ImageType;<br>
27   typedef vtkSmartPointer<vtkImageNoiseSource>  VTKNoiseType;<br>
28   typedef itk::VTKImageToImageFilter<ImageType> ConnectorType;<br>
29<br>
30   VTKNoiseType noise_source = VTKNoiseType::New();<br>
31   noise_source->SetWholeExtent(0,20,0,20,0,0);<br>
32   noise_source->SetMinimum(0.0);<br>
33   noise_source->SetMaximum(1.0);<br>
34   noise_source->Update();<br>
35<br>
36   ConnectorType::Pointer connector = ConnectorType::New();<br>
37   connector->SetInput(noise_source->GetOutput());<br>
38   connector->Update();<br>
39<br>
40   connector->GetOutput()->Print(std::cout);<br>
41   connector->GetImporter()->Print(std::cout);<br>
42   connector->GetExporter()->Print(std::cout);<br>
43<br>
44   connector->Print(std::cout);<br>
45<br>
46   return EXIT_SUCCESS;<br>
47 }<br>
<br>
<br>
2013/11/18 Matt McCormick-2 [via ITK Insight Users] <<br>
<a href="mailto:ml-node%2Bs2283740n7584406h17@n2.nabble.com">ml-node+s2283740n7584406h17@n2.nabble.com</a>><br>
<div class="im"><br>
> Hi,<br>
><br>
> Code to convert a VTK ImageData to an ITK Image can be found in the<br>
> ITKVtkGlue module [1].<br>
><br>
> Hope this helps,<br>
> Matt<br>
><br>
> [1]<br>
> <a href="http://itk.org/gitweb?p=ITK.git;a=blob;f=Modules/Bridge/VtkGlue/test/itkVTKImageToImageFilterTest.cxx;h=b22c9e8685cf26290249554d58232d3d14b24a97;hb=HEAD" target="_blank">http://itk.org/gitweb?p=ITK.git;a=blob;f=Modules/Bridge/VtkGlue/test/itkVTKImageToImageFilterTest.cxx;h=b22c9e8685cf26290249554d58232d3d14b24a97;hb=HEAD</a><br>

><br>
> On Mon, Nov 18, 2013 at 5:14 AM, azmagillian<br>
</div>> <[hidden email] <<a href="http://user/SendEmail.jtp?type=node&node=7584406&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584406&i=0</a>>><br>
<div class="im">> wrote:<br>
><br>
> > Jon you said you made a filter to  "transform your VTK data object to an<br>
> > ITK image so that you can use ITK's segmentation filter."<br>
> ><br>
> > Where can i find it?<br>
> ><br>
> >  Thanks!!!<br>
> ><br>
> ><br>
> > 2013/11/15 Jon Haitz Legarreta Gorroño [via ITK Insight Users] <<br>
</div>> > [hidden email] <<a href="http://user/SendEmail.jtp?type=node&node=7584406&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584406&i=1</a>>><br>
<div><div class="h5">> ><br>
> >> You should either use the filter Hans mentioned or the one I did to<br>
> >> transform your VTK data object to an ITK image so that you can use<br>
> ITK's<br>
> >> segmentation filter.<br>
> >><br>
> >> JON HAITZ<br>
> >><br>
> >><br>
> >><br>
> >> On 15 November 2013 10:19, azmagillian <[hidden email]<<br>
> <a href="http://user/SendEmail.jtp?type=node&node=7584387&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584387&i=0</a>><br>
> >> > wrote:<br>
> >><br>
> >>> Thank you all again !<br>
> >>><br>
> >>> As i figured the first step would be to apply the Conncted Threshold<br>
> Image<br>
> >>> Filter to 3d input<br>
> >>><br>
> >>> what changes should i make to the code?<br>
> >>> can i use as an input .vtk file (i converted .obj file to .vtk ) ?<br>
> >>><br>
> >>><br>
> >>> 2013/11/14 Jon Haitz Legarreta Gorroño [via ITK Insight Users] <<br>
> >>> [hidden email] <<a href="http://user/SendEmail.jtp?type=node&node=7584387&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584387&i=1</a>>><br>
><br>
> >>><br>
> >>><br>
> >>> > Hi there,<br>
> >>> > you can find ITK's region growing segmentation filters here:<br>
> >>> ><br>
> <a href="http://www.itk.org/Doxygen/html/group__RegionGrowingSegmentation.html" target="_blank">http://www.itk.org/Doxygen/html/group__RegionGrowingSegmentation.html</a><br>
> >>> ><br>
> >>> > You will find some guidelines to use them in the ITK SW guide:<br>
> >>> > <a href="http://www.itk.org/ItkSoftwareGuide.pdf" target="_blank">http://www.itk.org/ItkSoftwareGuide.pdf</a> (not up-to-date, but there<br>
> is<br>
> >>> an<br>
> >>> > ongoing effort to make it again).<br>
> >>> ><br>
> >>> > HTH,<br>
> >>> > JON HAITZ<br>
> >>> ><br>
> >>> ><br>
> >>> > On 14 November 2013 15:09, azmagillian <[hidden email]<<br>
> >>> <a href="http://user/SendEmail.jtp?type=node&node=7584364&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584364&i=0</a>><br>
> >>><br>
> >>> > > wrote:<br>
> >>> ><br>
> >>> >> Hans thanks for replying!<br>
> >>> >><br>
> >>> >> right now i have successfully read and display my .obj with vtk<br>
> >>> >><br>
> >>> >> for next step what should i do to use on this an itk filter ?<br>
> >>> >><br>
> >>> >> also is there code for seeded 3D region growing segmentation ?<br>
> >>> >><br>
> >>> >> i didn't get how to use this code<br>
> >>> >> <a href="http://insight-journal.org/browse/publication/178" target="_blank">http://insight-journal.org/browse/publication/178</a><br>
> >>> >><br>
> >>> >><br>
> >>> >> 2013/11/14 Johnson, Hans J [via ITK Insight Users] <<br>
> >>> >> [hidden email] <<br>
> <a href="http://user/SendEmail.jtp?type=node&node=7584364&i=1" target="_blank">http://user/SendEmail.jtp?type=node&node=7584364&i=1</a>>><br>
> >>><br>
> >>> >><br>
> >>> >><br>
> >>> >> > There is some code that can allow conversion.  It is not fully<br>
> >>> >> documented,<br>
> >>> >> > but last time I tried, it worked well.<br>
> >>> >> ><br>
> >>> >> > <a href="http://insight-journal.org/browse/publication/178" target="_blank">http://insight-journal.org/browse/publication/178</a><br>
> >>> >> ><br>
> >>> >> ><br>
> >>> >> > Hans<br>
> >>> >> ><br>
> >>> >> ><br>
> >>> >> ><br>
> >>> >> > On 11/14/13, 6:06 AM, "azmagillian" <[hidden email]<<br>
> >>> >> <a href="http://user/SendEmail.jtp?type=node&node=7584358&i=0" target="_blank">http://user/SendEmail.jtp?type=node&node=7584358&i=0</a>>><br>
> >>> >><br>
> >>> >> ><br>
> >>> >> > wrote:<br>
> >>> >> ><br>
> >>> >> > >Dear, ITK users , thanks in advance for your help<br>
> >>> >> > ><br>
> >>> >> > >I want to perform 3d segmentation of a .obj file<br>
> >>> >> > >my thought was to use connectedthreshold but there is not an<br>
> example<br>
> >>> >> for<br>
> >>> >> > >3d<br>
> >>> >> > >then i tried to use confidenceconnected threshold but i can't<br>
> give<br>
> >>> a.<br>
> >>> >> obj<br>
> >>> >> > >as<br>
> >>> >> > >input<br>
> >>> >> > ><br>
> >>> >> > >any ideas ?<br>
> >>> >> > >is there a way to convert .obj to a format suitable for itk<br>
> filters?<br>
> >>> >> > ><br>
> >>> >> > ><br>
> >>> >> > ><br>
> >>> >> > >--<br>
> >>> >> > >View this message in context:<br>
> >>> >> > ><br>
> >>> >> ><br>
> >>> >><br>
> >>><br>
> <a href="http://itk-insight-users.2283740.n2.nabble.com/3d-SEGMENTATION-OF-OBJ-FILE" target="_blank">http://itk-insight-users.2283740.n2.nabble.com/3d-SEGMENTATION-OF-OBJ-FILE</a><br>
> >>> >> > >-tp7584357.html<br>
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> Nabble.com.<br>
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> >>> >><br>
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> >>> >><br>
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