[ITK] [ITK-users] [ANN] ITK 4.12.0 has been released!

Francois Budin francois.budin at kitware.com
Tue Jun 6 13:03:23 EDT 2017


The Insight Segmentation and Registration Toolkit (ITK), is an open-source,
cross-platform library for multidimensional image analysis. On behalf of
the Insight Toolkit community, we are proud to announce that ITK 4.12.0 has
been released!

Links to the Sourceforge.net tarballs can be found on the download page:

 http://www.itk.org/ITK/resources/software.html

Outline

----------

1. Introduction

2. New Features

3. ITK Changelog

4. ITK Sphinx Examples Changelog

5. ITK Software Guide Changelog


Introduction

---------------

Developed by an international community, ITK collects best-of-breed
algorithms for registering, segmenting, analyzing, and quantifying
n-dimensional imaging data. The high-quality library facilitates
reproducible research, provides a software resource for teaching image
analysis, and offers a platform for commercial product development.

Here are a few selected highlights for this release:

- Strain remote module added to ITK. Strain quantifies local deformation of
a solid body. In medical imaging, it can be used to quantify growth or
atrophy of tissue.

- Better compilation support for Microsoft Visual Studio 2017, Clang 4, GCC7

- Filters moved out of Review: Morphological Watersheds, and Hessian-based
objectness.

- Performance improvements for some ITK filters: itkHistogram (increase
speed), itkImagePCAShapeModelEstimator (decrease memory usage).

The release also includes many improvements in ITK Python wrapping, such as
convenience functions to read and write images, better integration in the
Jupyter Notebook, new filters wrapped, and build support for the Microsoft
Visual C++ Compiler for Python 2.7. Other nice features have been added
such as improved palette true color support for PNG, TIFF, and BMP.

Congratulations to the 26 contributors to this release. We would especially
like to recognize the new contributors: Jared Vicory, Sam Horvath, Shusil
Dangi, Ben Boeckel, Yann Le Poul, Jean-Baptiste Vimort, and Samuel Gerber.

New Features

------------------

* Wrapping Improvements

- Enable BridgeNumPy by default with Python wrapping

- Build support for Microsoft Visual C++ Compiler for Python 2.7

- BridgeNumpy integrates new pairs of functions. GetArrayViewFromImage()
and GetImageViewFromArray() return views on the source object given as a
parameter to the function. Memory is shared among input and output objects
and the source object still manages pixel buffer memory. The existing
functions GetArrayFromImage() and GetImageFromArray() perform a deep copy
of the source object.

- Similar NumPy bridge functions have been created for VNL matrices and VNL
vectors.

- Convenience functions imread() and imwrite() have been added to the
Python itk namespace. These functions facilitate respectively reading and
writing images using ITK without having to specify the input or output
image component type. The naming of these functions follows the convention
used in several other Python project such as scikit-image and scipy.

- Better integration in Jupyter Notebook: addressed tab completion bug for
IPython >= 5.0.0, replaced underscore with ‘x’ to name attributes that
start with a digit to show attributes when trying to autocomplete in
IPython.

- Wrap itkN4BiasFieldCorrectionImageFilter, NormalVariateGenerator, and
PathToImageFilter.

- Allow calls to ImageFileWriter in Python with an ITK filter as input
image argument.

- Build Python wrapping with hidden visibility

* New Remote Modules

- Strain

- Filters to estimate a strain tensor field from a displacement field or a

spatial transformation

- http://hdl.handle.net/10380/3573

* Core Improvements

- Enable hidden visibility property with NIFTI and GIFTI static libraries

- Fix clearing build tree error

- Add examples and doc build flag support for external modules

- Support for recent Clang in FreeBSD

- Improved support for Visual Studio 2017

- Prefer std::atomic over compiler specific implementation

* Filtering Improvements

- Add OrientedBoudingBox attributes to ShapeLabelMap

- Skip generating export headers if module does not contain a target

- Introduce ITK_WRAP_PYTHON_LEGACY to exclude older Python package layout

- Move morphological watersheds out of ITKReview

- Add SetReferenceImage to GenerateImageSource

- Reduce memory usage of itkImagePCAShapeModelEstimator

- Improvement of itkHistogram in order to make it faster

- Better compatibility with OpenCVImageBridge

* IO Improvements

- Improvement of palette image support for PNG, TIFF and BMP

* Documentation Improvements

- Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples

* Remote Module Updates

- BridgeNumPy updated to latest upstream (04.28.2017)

* Third Party Library Updates

- Update SWIG version to 3.0.12

- Update PCRE version to 8.40

- MetaIO updated to latest upstream (04.08.2017)

- KWSys updated to latest upstream (04.20.2017)

- KWIML updated to latest upstream (02.27.2017)

- VNL updated to latest upstream (02.01.2017)

* Improved Code Coverage -- we are at 85.7%

- Jon Haitz-Legarreta's extensive code coverage improvements

* *Lots* of important bug fixes

* And much more! See details in the log below.

Changes from v4.12rc03 to v4.12.0

---------------------------------

Bradley Lowekamp (1):

     COMP: Inform Doxygen of ITK_FORCE_EXPORT_MACRO

Francois Budin (2):

     BUG: Remove weak symbol warnings on MacOS in VNL template classes

     BUG: Replace class forward declaration attributes with
ITK_FORWARD_EXPORT

Hans Johnson (2):

     COMP: Remove unused boiler plate constants

     COMP:  Incorrect scope resolution for typename

Jared Vicory (1):

     BUG: Fix LBFGS crash when minimum is starting point.

Matthew McCormick (6):

     COMP: Use ITK_TEMPLATE_EXPORT in explicit export forward declarations

     COMP: Suppress global weak symbol warnings for std::vector

     COMP: Linux explicitly instantiated build errors

     BUG: ITKIONIFTI DEPENDS on ITKNIFTI

     BUG: Remove duplicate VectorContainer integer wrapping

     BUG: Remove duplicate ImageSource Covariant Vector wrapping

Vladimir S. FONOV (1):

     MINC 2017-05-28 (002d510c)


Changes from v4.12rc02 to v4.12rc03

-----------------------------------

Bradley Lowekamp (4):

     BUG: include HDF5 config in ITK config

     BUG: Add fixed seed to registration tests

     ENH: Use scikit-ci-addons for CiricleCI CMake installation and junit

     BUG: Initialized the sampling seed for v3 registration test

Francois Budin (1):

     ENH: Remove 'weak symbol' warning on MacOS

Matthew McCormick (5):

     BUG: itk.ctype does not understand ints without signed

     BUG: Rename WrapITKBuildOptionsPython.py to itkBuildOptions.py

     DOC: Remove Doxygen note about GDCM version

     BUG: Bump Bridge NumPy to address Windows long sizes

     COMP: Suppress macOS std::string linker visibility warnings

Vladimir S. FONOV (1):

     MINC 2017-05-19 (f6853a70)


Changes from v4.12rc01 to v4.12rc02

-----------------------------------

Christina Rossmanith (1):

     BUG: calculate levelSetValue for IsoContourFilter with float precision

David T. Chen (1):

     DOC: Fix Pysical Typo

Francois Budin (3):

     BUG: Remove doxygen warnings 'Found unknown command \epsilon'

     ENH: Remove warning messages in GCC 5.1 due to ITK_TEMPLATE_EXPORT

     BUG: GCC 5.1 warnings 'type attributes ignored after type is already
defined'

Jon Haitz Legarreta Gorroño (1):

     DOC: Add use note to itkGridForwardWarpImageFilter.

Matthew McCormick (1):

     BUG: Update the Strain remote module to 2017-05-05

Vladimir S. FONOV (3):

     MINC 2017-04-28 (3d79acf3)

     MINC 2017-05-01 (4caf8f4c)

     MINC 2017-05-05 (cc682b52)


Changes from v4.11.0 to v4.12rc01

---------------------------------

Ben Boeckel (1):

     ENH: Add a script to help update third-party sources

Brad King (5):

     ENH: Update KWIML import script for new upstream URL

     ENH: Teach update-third-party.bash to add a Change-Id

     ENH: Port KWSys update script to update-third-party.bash

     ENH: KWSys: Filter out unused attributes during import

     ENH: KWSys: Apply attribute changes made upstream

Bradley Lowekamp (19):

     COMP: Enable hidden visibility property with NIFTI static libraries

     COMP: Enable hidden visibility property with GIFTI static libraries

     BUG: Correct variable name used to check CXX version

     BUG: Correct variable name used to check CXX version

     COMP: Enable hidden visibility property with NIFTI static libraries

     COMP: Enable hidden visibility property with GIFTI static libraries

     BUG: Initialize ConvergenceValue in constructor

     BUG: Initialize ConvergenceValue in constructor

     ENH: Update CircleCi script to download latest binary tar-ball

     BUG: Use CMAKE_DL_LIBS instead of explict "dl" library

     COMP: Fix CircleCI ITK data download file name

     ENH: Update CircleCI yaml file

     BUG: Apply changes from MetaIO upstream to remove static variables

     ENH: Update SWIG version to 3.0.12

     ENH: Update PCRE version to 8.40

     ENH: Add OrientedBoudingBox attributes to ShapeLabelMap

     COMP: Use std::abs over vnl_math_abs

     BUG: Initialize image data to 0

     ENH: Fix clearing build tree error

David T. Chen (1):

     BUG: Fixed quote style

Dženan Zukić (3):

     STYLE: Simplify code by using TestingMacros

     BUG: fixing wrong check for argument count

     ENH: Add Strain as a remote module

Floris Berendsen (2):

     COMP: Added missing png_get_uint_31 name mangling

     COMP: Added missing png_get_uint_31 name mangling

Francois Budin (58):

     STYLE: Typo corrections in itk*TopHatImageFilter.h

     ENH: Prefer std::atomic over compiler specific implementation

     BUG: Addresses 'ordered comparison between pointer and zero' error
(clang-4)

     BUG: Addresses InDoxygenGroup Test with Python 3.6 failures

     BUG: BSplineScatteredDataPointSetToImageFilter output image is not
generated

     BUG: itk::RGBPixel<unsigned short> needs to be wrapped for
itkTIFFImageIO

     BUG: Usage of std::atomic was incorrectly used in
itk::Detail::AtomicOps

     ENH: Exposing functions to set real and imaginary part of complex
numbers

     BUG: ITK_OVERRIDE  keyword for non-overriden funtion

     BUG: 'typename' cannot be used outside of template declaration

     BUG: Missing ITK_OVERRIDE

     BUG: ITK_OVERRIDE  keyword for non-overriden funtion

     BUG: ITK_OVERRIDE  keyword for non-overriden funtion

     BUG: ITK_OVERRIDE  keyword for non-overriden funtion

     BUG: Missing ITK_OVERRIDE

     ENH: Improving usability in IPython

     ENH: Update BridgeNumPy to most recent version (2017.02.24)

     BUG: 3523 Even padding most value representations with space instead
of '\0'

     BUG: Remove extra space in chronometer command

     DOC: Make it more explicit that 'push' authorization is not for
everybody

     BUG: 3523 Even padding most value representations with space instead
of '\0'

     BUG: 3519 KernelTransform WMatrix initialization

     BUG: KWSys symbols should not be exported with
WINDOWS_EXPORT_ALL_SYMBOLS

     COMP: Do not expose functions to set real and img part of complex
numbers

     BUG: KWSys symbols should not be exported with
WINDOWS_EXPORT_ALL_SYMBOLS

     BUG: 3519 KernelTransform WMatrix initialization

     DOC: Typo in itkNumberToString.h

     BUG: Attribute names cannot start with a digit

     BUG: Do not define deprecated function if ITK_LEGACY_REMOVE is selected

     BUG: Wrap EllipseSpatialObject std::list in Python

     ENH: Wrap itkN4BiasFieldCorrectionImageFilter in Python

     BUG: itkStatisticsAlgorithmTest throwing exception on VS2015Update3
and VS2017

     ENH: Skip generating export headers if module does not contain a target

     BUG: Wrapping of itkHessianToObjectnessMeasureImageFilter moved out of
Review

     ENH: Update BridgeNumPy to most recent version (2017.03.27)

     BUG: Wrapping of itkHessianToObjectnessMeasureImageFilter moved out of
Review

     BUG: Wrap EllipseSpatialObject std::list in Python

     ENH: Improving usability in IPython

     BUG: Attribute names cannot start with a digit

     BUG: Do not export GDCM and Expat symbols with
WINDOWS_EXPORT_ALL_SYMBOLS

     BUG: Do not export all symbols from third party libraries on Windows

     ENH: Allows to call ImageFileWriter in Python with Input=Filter

     BUG: Certain third party libraries need to export their symbols on
Windows

     BUG: Test if 'issubclass' only if 'isclass' is True

     ENH: Add Python convenience function to read images

     BUG: 3475 AccumulateImageFilter not setting direction cosines of
output image

     DOC: Removing typos in itkExtractImageFilter comments

     BUG: ProjectionImageFilter did not copy direction cosine information
to output

     BUG: Test if 'issubclass' only if 'isclass' is True

     BUG: 3475 AccumulateImageFilter not setting direction cosines of
output image

     BUG: Do not export GDCM and Expat symbols with
WINDOWS_EXPORT_ALL_SYMBOLS

     BUG: Do not export all symbols from third party libraries on Windows

     BUG: Certain third party libraries need to export their symbols on
Windows

     BUG: ProjectionImageFilter did not copy direction cosine information
to output

     ENH: Update BridgeNumPy (2016.04.28) and update itkExtras.py
accordingly

     BUG: Template type based input function parameter needs to be
deterministic

     ENH: Bump CMakeLists.txt version to 4.11.1

     BUG: Problems due to ComputeOrientedBoundingBox in
itkShapeLabelMapFilter

Jean-Baptiste VIMORT (1):

     PERF: Improvement of the itkHistogram class in order to make it faster

Jean-Christophe Fillion-Robin (2):

     ENH: Introduce ITK_WRAP_PYTHON_LEGACY to exclude older Python package
layout

     BUG: ITKPython: Do not install *.mdx files required only at generation
time

Johan Andruejol (1):

     ENH: Add wrapping for PathToImageFilter

Jon Haitz Legarreta (131):

     ENH: Improve the itkFileListVideoIO coverage.

     STYLE: Improve the BSplineScatteredDataPointSetToImageFilter style,

     ENH: Improve the itkBSplineScatteredDataPointSetToImageFilter coverage.

     ENH: Add missing ivars in function PrintSelf.

     STYLE: Improve ImageNoise filters' style.

     STYLE: Improve the ImageNoise filters tests' style.

     STYLE: Improve ITKImageSources module filters' style.

     STYLE: Improve the itkLinearInterpolateImageFunction style.

     ENH: Improve the itkLabelOverlapMeasuresImageFilter coverage.

     STYLE: Improve itkAdaptiveHistogramEqualizationImageFilter style.

     ENH: Improve itkAdaptiveHistogramEqualizationImageFilter coverage.

     STYLE: Improve itkKappaStatisticImageToImageMetric style.

     ENH: Improve the itkKappaStatisticImageToImageMetric coverage.

     STYLE: Improve itkBinaryGrindPeakImageFilter style.

     STYLE: Improve the itkCannyEdgeDetectionImageFilter style.

     ENH: Improve itkCannyEdgeDetectionImageFilter coverage.

     ENH: Improve itkBarrier class coverage.

     STYLE: Improve itkFlipImageFilterStyle.

     STYLE: Improve itkSpatialObjectToPointSetFilter style.

     STYLE: Improve itkStretchIntensityImageFilter style.

     ENH: Print all ivars for itkStretchIntensityImageFilter.

     ENH: Improve itkPhysicalPointImageSource class coverage.

     ENH: Add missing ivars to LabelMapMaskImageFilter PrintSelf.

     ENH: Improve itkRealTimeClock coverage.

     STYLE: Improve the itkRealTimeClock style.

     ENH: Improve itkBsplineDecompositionImageFilter coverage.

     ENH: Improve itkTestingStretchIntensityImageFilter coverage.

     STYLE: Improve itkPathToChainCodePathFilter style.

     ENH: Add a Get method for itkPathToChainCodePathFilter ivar.

     ENH: Add specific testing macro for boolean members.

     STYLE: Improve itkLabelMapMaskImageFilter style.

     STYLE: Improve BSplineDecompositionImageFilter style.

     ENH: Finish itkAdaptiveHistogramEqualizationImageFilter PrintSelf.

     COMP: Fix ImageGrid tests compiler warnings.

     ENH: Finish BSplineDecompositionImageFilter PrintSelf.

     BUG: Fix Uninitialized Memory errors reported by Valgrind.

     ENH: Improve itkLabelMapMaskImageFilter coverage.

     ENH: Improve itkBinaryGrindPeakImageFilter coverage.

     ENH: Improve itkPathToChainCodePathFilter coverage.

     ENH: Move LabelMap module test baselines.

     ENH: Move BinaryMathMorphology test baselines out of review.

     ENH: Move ImageFusion test baselines out of review.

     ENH: Improve itkAutoCropLabelMapFilter tests.

     ENH: Improve itkSpatialObjectToPointSetFilter coverage.

     ENH: Move ImageLabel test baselines out of Review.

     ENH: Move ImageGrid test baselines out of review.

     STYLE: Improve itkGaussianSpatialFunction class' style.

     ENH: Improve the ITKPath module classes coverage.

     BUG: Fix BSplineDecompositionImageFilter Valgrind defects.

     STYLE: Improve itkColorTable style.

     ENH: Improve itkHoughTransform2DLinesImageFilter coverage.

     ENH: Improve itkHoughTransform2DCirclesImageFilter coverage.

     BUG: Address uninitialized variable defects.

     STYLE: Improve itk::HistogramThresholdImageFilter style.

     DOC: Fix a typo in the term "threshold".

     STYLE: Imporve itkContourSpatialObjectPoint style.

     ENH: Print all HoughTransform2DLinesImageFilter ivars.

     STYLE: Fix type in Optimizersv4 and Metricsv4 modules.

     ENH: Add PhiLattice regression baseline.

     ENH: Print all itkVoronoiDiagram2DGenerator ivars.

     ENH: Improve itkColorTable coverage.

     ENH: Improve the itk::GradientDescentOptimizerv4 style.

     ENH: Improve the itkImageSources module's filters' coverage.

     ENH: Add PhiLattice regression baseline.

     ENH: Add a new test for itk::ContourSpatialObjectPoint.

     BUG: Fix bug in itkContourSpatialObjectPointTest test.

     STYLE: Improve the itkGaussianSpatialFunctionTest style.

     ENH: Improve itkVotingBinaryHoleFillingImageFilter coverage.

     BUG: Fix precision issues in itkGaborKernelFunctionTest.

     BUG: Relax tolerance in itkGaborKernelFunctionTest.

     DOC: Fix minor typo in itkHistogramThresholdImageFilter doc.

     ENH: Print all ivars in GradientDescentOptimizer base classes.

     STYLE: Improve TIFFImageIO tests.

     ENH: Add Get methods for itk::BSplineDecompositionImageFilter ivars.

     BUG: Fix TimeProbes name in itkLargeTIFFImageWriteReadTest.

     BUG: Fix memory leaks in BMP and PNG tests.

     COMP: Fix signed/unsigned mismatch warning.

     COMP: Fix signed/unsigned mismatch warning.

     BUG: Fix Superclass for ITKThresholding calculators.

     BUG: Make the number of filters be an integer.

     ENH: Honor the itkBooleanMacro for boolean class members.

     ENH: Improve the Watershed module code coverage.

     COMP: Fix double to unsigned int cast warning.

     ENH: Improve coverage for MorphologicalWatersheds filters.

     STYLE: Improve the Denoising module style.

     BUG: Fix the itkPatchBasedDenoisingImageFilter RTTI Superclass name.

     COMP: Fix unsigned char from double conversion warning.

     ENH: Improve itkWatershedMiniPipelineProgressCommand coverage.

     ENH: Improve the itkRegionalMin/Max filters member print types.

     ENH: Improve the itkMorphologicalWatershedFromMarkers coverage.

     ENH: Improve the itkIsolatedWatershedImageFilter coverage.

     STYLE: Improve the Denoisinig module style.

     STYLE: Improve the FEMRegistration module files style.

     DOC: Fix itkOrientImageFilter UseImageDirection method doc typo.

     STYLE: Improve the ITKThresholding module classes style.

     BUG: Fix itkIsolatedWatershedImageFilterTest valgrind errors.

     STYLE: Improve the itkApproximateSignedDistanceMapImageFilter style.

     ENH: Improve Denoising module filters' coverage.

     ENH: Improve the FEMRegistration module coverage.

     STYLE: Improve the itkDisplacementFieldTransform class style.

     STYLE: Limit itkFlipImageFilter methods' loops variables' scope.

     ENH: Improve itkFlipImageFilter coverage.

     COMP: Fix itkPhysicsBasedNonRigidRegistrationMethodTest cast warning.

     STYLE: Improve the HessianToObjectnessMeasureImageFilter style.

     ENH: Improve coverage for HessianToObjectnessMeasureImageFilter.

     ENH: Improve DiscreteGaussianImage operators review classes' coverage.

     ENH: Add test for itk::ConicShellInteriorExteriorSpatialFunction.

     ENH: Print all itkHoughTransform2DCirclesImageFilter ivars.

     ENH: Improve coverage for itk::DisplacementFieldTransform.

     STYLE: Make itkPatchBasedDenoisingBaseImageFilter ivars private.

     STYLE: Improve the itkRobustAutomaticThreshold classes style.

     COMP: Fix itkDisplacementFieldTransformTest compiler warning.

     STYLE: Improve the itkGridForwardWarpImageFilter style.

     ENH: Improve coverage for itkGridForwardWarpImageFilter.

     ENH: Improve coverage for itkRobustAutomaticThreshold classes.

     ENH: Remove duplicate test files in Review.

     DOC: Fix itkDivideByConstantImageFilter doc error.

     STYLE: Improve exception message.

     STYLE: Improve ImageIntensity module image arithm op tests' style.

     STYLE: Improve HConc/Conv HMaxima/HMinima image filters' style.

     ENH: Improve the HConc/HConv HMaxima/HMinima filters' coverage.

     ENH: Improve DiscreteGaussianImage operators review classes' coverage.

     ENH: Change the URL for the PCA remote module repo.

     STYLE: Make flow control variables have a local scope.

     ENH: Add examples and doc build flag support for external modules.

     DOC: Remove wrong group tag for itk::QuadEdgeMeshExtendedTraits.

     BUG: Fix itk::FastMarchingImageFilter RTTI superclass name.

     STYLE: Improve the itk::NodePair class style.

     STYLE: Use the ITK_MANUAL_INSTANTIATION macro consistently.

     STYLE: Delete FastMarching module classes methods consistently.

     DOC: Fix typo in the "implementation" word across the code.

Jon Haitz Legarreta Gorroño (2):

     STYLE: Improve itkWarpHarmonicEnergyCalculator style.

     DOC: Add a notice to let users know about related implementations.

KWIML Upstream (1):

     KWIML 2017-02-27 (aa3a7733)

KWSys Upstream (3):

     KWSys 2016-11-21 (cb55cf5a)

     KWSys 2017-03-28 (34999b6a)

     KWSys 2017-04-20 (8785f84f)

Matthew McCormick (40):

     COMP: Add missing headers in OpenCVImageBridge

     COMP: Use double for gradient calculations in MinMaxCurvatureFlow

     ENH: Bump ITK version to 4.12.0.

     COMP: Add VCL support for GCC 7

     COMP: Define ITK_FALLTHROUGH for GCC 7

     COMP: Add missing ITK_FALLTHROUGH in TiffImageIO

     COMP: Avoid -Warray-bounds in FixedArray with GCC 7

     COMP: Add ProcessObject include in itkLevelSetBase.hxx

     ENH: Exclude Kitware Robot from third party update commit messages

     BUG: Address tab completion with IPython >= 5.0.0

     BUG: Do not use terminal_progress with the Jupyter Notebook

     ENH: Enable BridgeNumPy with Python wrapping

     COMP: Do not require numeric_traits::has_infinity

     BUG: Fix passing _NO_TR1 definition with VS9 and Python

     BUG: Do not tests that require NumPy when it is not available

     ENH: Build Python wrapping with hidden visibility

     ENH: Move morphological watersheds out of ITKReview

     BUG: Do not upload top level folder in ArchiveTestingDataOnGirder.py

     BUG: Remove unused content links from PNG test additions

     ENH: Add .sha512 content links for IO pallette test data

     BUG: Add missing export macros for SpatialObject forward declarations

     BUG: Always wrap basic type RGBUC

     COMP: Do not add Visual Studio numeric_traits workarounds with MinGWPy

     COMP: Increase gold linker requirement to GCC 4.9.0

     COMP: Detect Windows with _WIN32 in socket++/fork.cpp

     BUG: Revert "BUG: Include installed modules in ITK_MODULES_ENABLED"

     BUG: Set ${itk-module}_ENABLE_SHARED in ITKModuleExternal

     BUG: PolyLineParametricPath must be loaded before PathToImageFilter

     COMP: Address Python 2.7 Windows _hypot build errors

     COMP: Undefine Py_hash_t when wrapping VtkGlue

     ENH: Update BridgeNumPy to most recent version (2017.03.05)

     BUG: Improve itkTemplate New compatibility with Python 3

     ENH: Bump CastXML to 2017-04-18

     STYLE: Remove empty or erroreous comments in ImageToImageFilter

     ENH: Use itk.imread and itk.imwrite as standard function names

     BUG: Correct size specification in ImportImageFilter::SetImportPointer

     BUG: Improve large file support in MetaIO

     ENH: Wrap itk::IdentifierType for ScalarToRGBColormapImageFilter

     BUG: LevelSetNeighborhoodExtractor uses spacing

     BUG: Fix PCRE 8.40 download URL

MetaIO Maintainers (1):

     MetaIO 2017-04-08 (dead6687)

Olivier Commowick (1):

     BUG: Correct ITK eigen system (was producing NaN or different values
than VNL)

Pablo Hernandez-Cerdan (4):

     ENH: Add SetReferenceImage to GenerateImageSource.

     ENH: Change the metadata of all outputs in GenerateImageSource.

     BUG: Fix Normalization kernel step of ConvolutionImageFilter.

     BUG: Remove call to Superclass::GenerateOutputInformation.

Richard Beare (1):

     DOC: PrincipleComponent flag incorrectly reported by PrintSelf

Sam Horvath (1):

     PERF: reduce memory usage of itkImagePCAShapeModelEstimator

Samuel Gerber (2):

     DOC: Added description to itkLBFGSOptimizerv4.h

     DOC: LBFGSOptimizer doc update

Shusil Dangi (2):

     ENH: Ignores MacOS .DS_Store file

     ENH: Wrap NormalVariateGenerator in the Statistics Module

Simon Rit (2):

     BUG: memory leak in ITK_USE_THREADPOOL

     BUG: Join threads when using thread pool (ITK_USE_THREADPOOL)

Taylor Braun-Jones (1):

     COMP: Only include the headers for required OpenCV modules (fixup)

VXL Maintainers (2):

     VNL 2017-02-01 (ae6eff5e)

     VNL 2017-02-08 (ae8eef13)

Yann Le Poul (4):

     ENH: improvement of palette image support for PNG TIFF and BMP.

     STYLE: Misleading IsReadAsScalarPlusPalette Printing string

     STYLE: ReadAsScalarPlusPalette info already printed in itkImageIOBase

     BUG: ExpandRGBPalette used instead of IsReadAsScalarPlusPalette

ITK Sphinx Examples Changes

-------------------------------------------

Beatriz Paniagua (1):

     ENH: Add FlipImageFilter

Dženan Zukić (3):

     BUG: fixing misspelled directory name

     ENH: translating ImageReadExtractFilterInsertWrite into Python

     ENH: updating TODO list with recent patches

Francois Budin (4):

     BUG: Reducing Windows path length was not consistent

     ENH: Import data into an ITK Image

     BUG: Move FlipImageFilter from src/Core/Common to
src/Filtering/ImageGrid

Maeliss Jallais (1):

     ENH: Add ReadWriteVectorImage

Matt McCormick (32):

     BUG: Clean up ObserveAnEvent

     ENH: Add .sha512 content links

     ENH: Remove .md5 content links

     ENH: Update ExternalData_URL_TEMPLATES for sha512 resources

     ENH: Update the ITKExamples scripts to use the .sha512 content links

     ENH: Update CMake/ExternalData.cmake

     ENH: Remove Utilities/UploadBinaryData.py.in

     ENH: Remove Utilities/ArchiveBinaryData.py.in

     ENH: Remove pydas and related submodules

     ENH: Bump ITK to 2017-03-06 master

     ENH: Use GitHub for faster ITK repository downloads

     DOC: Update UploadBinaryData.rst

     DOC: Tweak content link usage with girder-cli

     DOC: Remove ContributeWithWebInterface.rst

     DOC: Swap WriteANewExample / ContributeWithGit order

     ENH: Do not build the Python wrapping in the Superbuild

     ENH: Enable ITKExamples_USE_WRAP_PYTHON by default

     ENH: Create itkpython virtualenv on Mac and Linux

     STYLE: Do not uses spaces after/before brackets in CMakeLists.txt

     ENH: Add the superbuild itkpython binary folder to FindSphinx

     BUG: CreateNewExample.py outputs template Code.py

     ENH: Download itkpython in the Windows superbuild

     DOC: Recommend cloning into a short directory on Windows

     ENH: Reduce Windows superbuild path length requirements

     BUG: Fix BoundingBoxOfAPointSetTestPython on Windows

     ENH: Add example image filenames in template figure directive

     ENH: Add Create An Image example

     BUG: CreateAImageRegion -> CreateAnImageRegion

     BUG: Fix CreateAnImageRegion output regex matching

     STYLE: Address spacing in CreateAnImage

     BUG: Update the Python package URL, nightly to latest

     DOC: How to run a Python example

Max Smolens (5):

     BUG: Fix errors in generated Code.py

     ENH: Remove CannyEdgeDetectionImageFilter TODO items

     ENH: Add itk.RGBToLuminanceImageFilter Python example

     DOC: Fix typo in contribution documentation

     ENH: Add WarpImageFilter example

Neal Siekierski (1):

     ENH: Add example of itk::Statistics::Histogram creation and access

Sam Horvath (2):

     ENH: Add CreateAnImageOfVectors

     ENH: Add BlurringAnImageUsingABinomialKernel

ITK Software Guide Changes

----------------------------------------

Jon Haitz Legarreta (1):

     DOC: Add testing section to SW guide.

Matt McCormick (6):

     DOC: Document itk_module_add_library

     DOC: Modules without a src/ directory should not set ENABLE_SHARED

     Merge "DOC: Add testing section to SW guide."

     DOC: Update the Kitware BrainWeb data link

     BUG: Escape hash in Girder URL

     DOC: Add Python package installation instructions
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