[ITK] [ITK-dev] Fwd: Scale and share your ITK software using Medimsight

Javier González González-Zabaleta jgonzabal at gmail.com
Wed May 27 03:57:43 EDT 2015


Hello colleagues,

Medimsight is a new cloud platform that wants to help medical image
analysis developers to share and enhance their analysis algorithms. We put
at the same place, R&D and an easy UI for Clinicians worldwide.

Develop in Medimsight is very easy, we use Linux machines and all the
standard libraries. Just encapsulate your code in python. Even if you have
code in C++, Java, etc, your code will work in our cloud in a few minutes.

To put a new method on Medimsight is absolutely free for developers and if
you decide to win money with it you will decide the final price with a fee
of just the 33% of sales. Easy and fast distributions that will help your
team to get access to more clients and also get faster certifications. We
want to promote the use of ITK (Or SimpleITK) and we will do a competition
for new methods in the near future.

Here is an example of code that uses an ITK executable and SimpleITK:

*myinput = mdsutil.get_input("vol_t1")*

*import subprocess*

*dicom2nrrd = "./DicomSeriesReadImageWrite2 " + myinput + ' ' + 'head.nrrd'*
*out, err = subprocess.Popen(dicom2nrrd, shell=True,
stdout=subprocess.PIPE, stderr=subprocess.PIPE).communicate()*

*import SimpleITK as sitk*

*img = sitk.ReadImage('head.nrrd')*

*t = sitk.ThresholdImageFilter()*
*t.SetLower(500)*
*t.SetUpper(1000)*
*t.SetOutsideValue(0)*
*timg = t.Execute(img)*

*sitk.WriteImage(timg, 'volume.nii.gz')*

*mdsutil.set_output("vol_out", 'volume.nii.gz')*

Users will receive the new volume as another image, but also, we can get
back .PDF, .VTK, video, .TRK, etc.

I invite you to join Medimsight community.

Best regards!

-- 
Javier González Glez.-Zabaleta
Tel. Móvil: (+34) 687918369
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