From scopatz at gmail.com  Tue Aug  4 20:58:09 2015
From: scopatz at gmail.com (Anthony Scopatz)
Date: Wed, 05 Aug 2015 00:58:09 +0000
Subject: [Cmb-users] Mac Version v4.x MOAB and sat file support
In-Reply-To: <CAPk-6T7Tkg2pWd58_6YdX6Cw3D8G5w9Cv8ipmX+jiqO+H4j8=Q@mail.gmail.com>
References: <CAPk-6T7aL_hPOseLyDvzBtjMVomWFsSqY4X0DditMGDBSsw1Rg@mail.gmail.com>
 <317DF244-C75A-48AF-AA83-992BDEAFE375@kitware.com>
 <CAPk-6T4ri_vpVAUz6URGLXZ6dULXoYa=W4hdkgh=8UFAJ+zYOg@mail.gmail.com>
 <CAPk-6T5-_aALEQqnipf26_oFhDRQ9byZFWRcYY7x912BmRd+fw@mail.gmail.com>
 <2D000EF6-7C42-4243-B49A-6690537AF468@kitware.com>
 <CAPk-6T6YuHzvEMKm4uO4fpEz31kce=Yai4J7i0uBq-Kb9jQetQ@mail.gmail.com>
 <42D05083-52E6-4BCA-8C31-954288B1FCA4@kitware.com>
 <CAPk-6T7Tkg2pWd58_6YdX6Cw3D8G5w9Cv8ipmX+jiqO+H4j8=Q@mail.gmail.com>
Message-ID: <CAPk-6T50FUdzaMRv=Vb+eY3WaHAvYEBkHr99MUmiqM+soQqyqA@mail.gmail.com>

Hi Robert,

[sending with out the file]

Thanks for updating the package.  We took a look at CMB during our meeting
at NCSA this past week.  It looks very promising for a lot of workflow
issues.

I had a couple of questions myself, and I'll let Pat and Vijay add their
own, should they choose to.

   - What exactly are you looking at in an h5m file?  Are you looking at a
   CGM generated geometry? For example, the attached file has a bunch of hexes
   in it, but they don't seem to be displayed.  What are we missing?
   - One of the things to come out of the past couple of days is a new
   suite of Python bindings, directly to MOAB. This is to replace - and
   hopefully exceed - the PyTAPS bindings. Is this something the CMB is
   interested in? If so, in what capacity?

Thanks!

Be Well

On Fri, Jul 31, 2015 at 5:18 PM Anthony Scopatz <scopatz at gmail.com> wrote:

> Thanks Robert!
>
> I'll take a look on Monday,
>
> Be Well
> Anthony
>
> On Fri, Jul 31, 2015 at 1:14 PM Robert Michael O'Bara <
> bob.obara at kitware.com> wrote:
>
>> Hi Anthony,
>>
>> There is a new mac version out with MOAB support.  Please let me know if
>> you have any questions.  Sorry for the delay on this.
>>
>> Bob
>>
>> Robert M. O'Bara, MEng.
>> Assistant Director of Scientific Computing
>>
>> Kitware Inc.
>> 28 Corporate Drive
>> Suite 101
>> Clifton Park, NY 12065
>>
>> Phone: (518) 881- 4931
>>
>>
>>
>>
>> On Jul 27, 2015, at 8:24 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>
>> Hi Bob,
>>
>> That would be great! We are running a hackathon at UW-Madison all this
>> week.  Wednesday or Thursday would still give us some time to play around
>> with it.  Thanks a ton.
>>
>> Be Well
>> Anthony
>>
>> On Mon, Jul 27, 2015 at 7:22 PM Robert Michael O'Bara <
>> bob.obara at kitware.com> wrote:
>>
>>> Hi Anthony,
>>>
>>> I just wanted to give you a quick update.  The Moab option was turned
>>> off in the build process.  I should be able to get you a release with Moab
>>> in the next couple of days.  Please let me know if you need something
>>> sooner.
>>>
>>> Bob
>>>
>>> Sent from my iPad
>>>
>>> On Jul 27, 2015, at 6:57 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>>
>>> PS I have a message in the admin queue because the attachment was 16 kb
>>> too large.
>>>
>>> On Mon, Jul 27, 2015 at 12:55 PM Anthony Scopatz <scopatz at gmail.com>
>>> wrote:
>>>
>>>> Hi Bob,
>>>>
>>>> We are trying to load MOAB file.  The attached one, for example.
>>>>
>>>> Be Well
>>>> Anthony
>>>>
>>>>
>>>> On Mon, Jul 27, 2015 at 12:48 PM Robert Michael O'Bara <
>>>> bob.obara at kitware.com> wrote:
>>>>
>>>>> Hi Anthony,
>>>>>
>>>>> Are you trying to load in Exodus Files or MOAB files?
>>>>>
>>>>> Bob
>>>>>
>>>>> Robert M. O'Bara, MEng.
>>>>> Assistant Director of Scientific Computing
>>>>>
>>>>> Kitware Inc.
>>>>> 28 Corporate Drive
>>>>> Suite 101
>>>>> Clifton Park, NY 12065
>>>>>
>>>>> Phone: (518) 881- 4931
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Jul 27, 2015, at 12:56 PM, Anthony Scopatz <scopatz at gmail.com>
>>>>> wrote:
>>>>>
>>>>> Hello All,
>>>>>
>>>>> I just installed version v4.0 for Mac.  It seems that only the native
>>>>> format is supported. It seems as though there is a plug-in infrastructure.
>>>>> How do I install the plugins for MOAB and sat that seemed to work with v3.x
>>>>> on Linux?
>>>>>
>>>>> Be Well
>>>>> Anthony
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Cmb-users mailing list
>>>>> Cmb-users at computationalmodelbuilder.org
>>>>> http://public.kitware.com/mailman/listinfo/cmb-users
>>>>>
>>>>>
>>>>>
>>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/cmb-users/attachments/20150805/9102661e/attachment.html>

From bob.obara at kitware.com  Thu Aug  6 12:04:50 2015
From: bob.obara at kitware.com (Robert Michael O'Bara)
Date: Thu, 6 Aug 2015 12:04:50 -0400
Subject: [Cmb-users] Mac Version v4.x MOAB and sat file support
In-Reply-To: <CAPk-6T50FUdzaMRv=Vb+eY3WaHAvYEBkHr99MUmiqM+soQqyqA@mail.gmail.com>
References: <CAPk-6T7aL_hPOseLyDvzBtjMVomWFsSqY4X0DditMGDBSsw1Rg@mail.gmail.com>
 <317DF244-C75A-48AF-AA83-992BDEAFE375@kitware.com>
 <CAPk-6T4ri_vpVAUz6URGLXZ6dULXoYa=W4hdkgh=8UFAJ+zYOg@mail.gmail.com>
 <CAPk-6T5-_aALEQqnipf26_oFhDRQ9byZFWRcYY7x912BmRd+fw@mail.gmail.com>
 <2D000EF6-7C42-4243-B49A-6690537AF468@kitware.com>
 <CAPk-6T6YuHzvEMKm4uO4fpEz31kce=Yai4J7i0uBq-Kb9jQetQ@mail.gmail.com>
 <42D05083-52E6-4BCA-8C31-954288B1FCA4@kitware.com>
 <CAPk-6T7Tkg2pWd58_6YdX6Cw3D8G5w9Cv8ipmX+jiqO+H4j8=Q@mail.gmail.com>
 <CAPk-6T50FUdzaMRv=Vb+eY3WaHAvYEBkHr99MUmiqM+soQqyqA@mail.gmail.com>
Message-ID: <09B6BC84-1074-4BAF-9C26-23D7920B0899@kitware.com>

Hi Anthony,

Sorry I haven't gotten back to you but I had a death in the family last weekend. I'll be back in the office tomorrow.  I'll send a reply to your questions asap.

Bob

Sent from my iPhone

> On Aug 4, 2015, at 8:58 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
> 
> Hi Robert, 
> 
> [sending with out the file]
> 
> Thanks for updating the package.  We took a look at CMB during our meeting at NCSA this past week.  It looks very promising for a lot of workflow issues.
> 
> I had a couple of questions myself, and I'll let Pat and Vijay add their own, should they choose to.
> What exactly are you looking at in an h5m file?  Are you looking at a CGM generated geometry? For example, the attached file has a bunch of hexes in it, but they don't seem to be displayed.  What are we missing?
> One of the things to come out of the past couple of days is a new suite of Python bindings, directly to MOAB. This is to replace - and hopefully exceed - the PyTAPS bindings. Is this something the CMB is interested in? If so, in what capacity?
> Thanks!
> 
> Be Well
> 
>> On Fri, Jul 31, 2015 at 5:18 PM Anthony Scopatz <scopatz at gmail.com> wrote:
>> Thanks Robert!
>> 
>> I'll take a look on Monday,
>> 
>> Be Well
>> Anthony
>> 
>>> On Fri, Jul 31, 2015 at 1:14 PM Robert Michael O'Bara <bob.obara at kitware.com> wrote:
>>> Hi Anthony,
>>> 
>>> There is a new mac version out with MOAB support.  Please let me know if you have any questions.  Sorry for the delay on this.
>>> 
>>> Bob
>>> 
>>> Robert M. O'Bara, MEng.
>>> Assistant Director of Scientific Computing
>>> 
>>> Kitware Inc.
>>> 28 Corporate Drive
>>> Suite 101
>>> Clifton Park, NY 12065
>>> 
>>> Phone: (518) 881- 4931
>>> 
>>> 
>>> 
>>> 
>>>> On Jul 27, 2015, at 8:24 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>>> 
>>>> Hi Bob, 
>>>> 
>>>> That would be great! We are running a hackathon at UW-Madison all this week.  Wednesday or Thursday would still give us some time to play around with it.  Thanks a ton.
>>>> 
>>>> Be Well
>>>> Anthony
>>>> 
>>>>> On Mon, Jul 27, 2015 at 7:22 PM Robert Michael O'Bara <bob.obara at kitware.com> wrote:
>>>>> Hi Anthony,
>>>>> 
>>>>> I just wanted to give you a quick update.  The Moab option was turned off in the build process.  I should be able to get you a release with Moab in the next couple of days.  Please let me know if you need something sooner.
>>>>> 
>>>>> Bob
>>>>> 
>>>>> Sent from my iPad
>>>>> 
>>>>>> On Jul 27, 2015, at 6:57 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>>>>> 
>>>>>> PS I have a message in the admin queue because the attachment was 16 kb too large.
>>>>>> 
>>>>>>> On Mon, Jul 27, 2015 at 12:55 PM Anthony Scopatz <scopatz at gmail.com> wrote:
>>>>>>> Hi Bob, 
>>>>>>> 
>>>>>>> We are trying to load MOAB file.  The attached one, for example.
>>>>>>> 
>>>>>>> Be Well
>>>>>>> Anthony
>>>>>>> 
>>>>>>> 
>>>>>>>> On Mon, Jul 27, 2015 at 12:48 PM Robert Michael O'Bara <bob.obara at kitware.com> wrote:
>>>>>>>> Hi Anthony,
>>>>>>>> 
>>>>>>>> Are you trying to load in Exodus Files or MOAB files?
>>>>>>>> 
>>>>>>>> Bob
>>>>>>>> 
>>>>>>>> Robert M. O'Bara, MEng.
>>>>>>>> Assistant Director of Scientific Computing
>>>>>>>> 
>>>>>>>> Kitware Inc.
>>>>>>>> 28 Corporate Drive
>>>>>>>> Suite 101
>>>>>>>> Clifton Park, NY 12065
>>>>>>>> 
>>>>>>>> Phone: (518) 881- 4931
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> On Jul 27, 2015, at 12:56 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>>>>>>>> 
>>>>>>>> 
>>>>>>>>> Hello All, 
>>>>>>>>> 
>>>>>>>>> I just installed version v4.0 for Mac.  It seems that only the native format is supported. It seems as though there is a plug-in infrastructure.  How do I install the plugins for MOAB and sat that seemed to work with v3.x on Linux?
>>>>>>>>> 
>>>>>>>>> Be Well
>>>>>>>>> Anthony
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>> 
>>>>>>>>> _______________________________________________
>>>>>>>>> Cmb-users mailing list
>>>>>>>>> Cmb-users at computationalmodelbuilder.org
>>>>>>>>> http://public.kitware.com/mailman/listinfo/cmb-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/cmb-users/attachments/20150806/827f22f6/attachment.html>

From scopatz at gmail.com  Thu Aug  6 12:06:30 2015
From: scopatz at gmail.com (Anthony Scopatz)
Date: Thu, 06 Aug 2015 16:06:30 +0000
Subject: [Cmb-users] Mac Version v4.x MOAB and sat file support
In-Reply-To: <09B6BC84-1074-4BAF-9C26-23D7920B0899@kitware.com>
References: <CAPk-6T7aL_hPOseLyDvzBtjMVomWFsSqY4X0DditMGDBSsw1Rg@mail.gmail.com>
 <317DF244-C75A-48AF-AA83-992BDEAFE375@kitware.com>
 <CAPk-6T4ri_vpVAUz6URGLXZ6dULXoYa=W4hdkgh=8UFAJ+zYOg@mail.gmail.com>
 <CAPk-6T5-_aALEQqnipf26_oFhDRQ9byZFWRcYY7x912BmRd+fw@mail.gmail.com>
 <2D000EF6-7C42-4243-B49A-6690537AF468@kitware.com>
 <CAPk-6T6YuHzvEMKm4uO4fpEz31kce=Yai4J7i0uBq-Kb9jQetQ@mail.gmail.com>
 <42D05083-52E6-4BCA-8C31-954288B1FCA4@kitware.com>
 <CAPk-6T7Tkg2pWd58_6YdX6Cw3D8G5w9Cv8ipmX+jiqO+H4j8=Q@mail.gmail.com>
 <CAPk-6T50FUdzaMRv=Vb+eY3WaHAvYEBkHr99MUmiqM+soQqyqA@mail.gmail.com>
 <09B6BC84-1074-4BAF-9C26-23D7920B0899@kitware.com>
Message-ID: <CAPk-6T7c_GgcDO8A1n9b54Uxm=2jQ9wtO7ggC4zvFxRpwLZR7w@mail.gmail.com>

Hi Bob,

No rush.  I am sorry for your loss.

Be Well
Anthony

On Thu, Aug 6, 2015 at 12:04 PM Robert Michael O'Bara <bob.obara at kitware.com>
wrote:

> Hi Anthony,
>
> Sorry I haven't gotten back to you but I had a death in the family last
> weekend. I'll be back in the office tomorrow.  I'll send a reply to your
> questions asap.
>
> Bob
>
> Sent from my iPhone
>
> On Aug 4, 2015, at 8:58 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>
> Hi Robert,
>
> [sending with out the file]
>
> Thanks for updating the package.  We took a look at CMB during our meeting
> at NCSA this past week.  It looks very promising for a lot of workflow
> issues.
>
> I had a couple of questions myself, and I'll let Pat and Vijay add their
> own, should they choose to.
>
>    - What exactly are you looking at in an h5m file?  Are you looking at
>    a CGM generated geometry? For example, the attached file has a bunch of
>    hexes in it, but they don't seem to be displayed.  What are we missing?
>    - One of the things to come out of the past couple of days is a new
>    suite of Python bindings, directly to MOAB. This is to replace - and
>    hopefully exceed - the PyTAPS bindings. Is this something the CMB is
>    interested in? If so, in what capacity?
>
> Thanks!
>
> Be Well
>
> On Fri, Jul 31, 2015 at 5:18 PM Anthony Scopatz <scopatz at gmail.com> wrote:
>
>> Thanks Robert!
>>
>> I'll take a look on Monday,
>>
>> Be Well
>> Anthony
>>
>> On Fri, Jul 31, 2015 at 1:14 PM Robert Michael O'Bara <
>> bob.obara at kitware.com> wrote:
>>
>>> Hi Anthony,
>>>
>>> There is a new mac version out with MOAB support.  Please let me know if
>>> you have any questions.  Sorry for the delay on this.
>>>
>>> Bob
>>>
>>> Robert M. O'Bara, MEng.
>>> Assistant Director of Scientific Computing
>>>
>>> Kitware Inc.
>>> 28 Corporate Drive
>>> Suite 101
>>> Clifton Park, NY 12065
>>>
>>> Phone: (518) 881- 4931
>>>
>>>
>>>
>>>
>>> On Jul 27, 2015, at 8:24 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>>
>>> Hi Bob,
>>>
>>> That would be great! We are running a hackathon at UW-Madison all this
>>> week.  Wednesday or Thursday would still give us some time to play around
>>> with it.  Thanks a ton.
>>>
>>> Be Well
>>> Anthony
>>>
>>> On Mon, Jul 27, 2015 at 7:22 PM Robert Michael O'Bara <
>>> bob.obara at kitware.com> wrote:
>>>
>>>> Hi Anthony,
>>>>
>>>> I just wanted to give you a quick update.  The Moab option was turned
>>>> off in the build process.  I should be able to get you a release with Moab
>>>> in the next couple of days.  Please let me know if you need something
>>>> sooner.
>>>>
>>>> Bob
>>>>
>>>> Sent from my iPad
>>>>
>>>> On Jul 27, 2015, at 6:57 PM, Anthony Scopatz <scopatz at gmail.com> wrote:
>>>>
>>>> PS I have a message in the admin queue because the attachment was 16 kb
>>>> too large.
>>>>
>>>> On Mon, Jul 27, 2015 at 12:55 PM Anthony Scopatz <scopatz at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi Bob,
>>>>>
>>>>> We are trying to load MOAB file.  The attached one, for example.
>>>>>
>>>>> Be Well
>>>>> Anthony
>>>>>
>>>>>
>>>>> On Mon, Jul 27, 2015 at 12:48 PM Robert Michael O'Bara <
>>>>> bob.obara at kitware.com> wrote:
>>>>>
>>>>>> Hi Anthony,
>>>>>>
>>>>>> Are you trying to load in Exodus Files or MOAB files?
>>>>>>
>>>>>> Bob
>>>>>>
>>>>>> Robert M. O'Bara, MEng.
>>>>>> Assistant Director of Scientific Computing
>>>>>>
>>>>>> Kitware Inc.
>>>>>> 28 Corporate Drive
>>>>>> Suite 101
>>>>>> Clifton Park, NY 12065
>>>>>>
>>>>>> Phone: (518) 881- 4931
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Jul 27, 2015, at 12:56 PM, Anthony Scopatz <scopatz at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>> Hello All,
>>>>>>
>>>>>> I just installed version v4.0 for Mac.  It seems that only the native
>>>>>> format is supported. It seems as though there is a plug-in infrastructure.
>>>>>> How do I install the plugins for MOAB and sat that seemed to work with v3.x
>>>>>> on Linux?
>>>>>>
>>>>>> Be Well
>>>>>> Anthony
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> Cmb-users mailing list
>>>>>> Cmb-users at computationalmodelbuilder.org
>>>>>> http://public.kitware.com/mailman/listinfo/cmb-users
>>>>>>
>>>>>>
>>>>>>
>>>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/cmb-users/attachments/20150806/f5f2dac6/attachment-0001.html>

From david.thompson at kitware.com  Sat Aug 15 16:13:32 2015
From: david.thompson at kitware.com (David Thompson)
Date: Sat, 15 Aug 2015 16:13:32 -0400
Subject: [Cmb-users] Manual on readthedocs.org
Message-ID: <50031A99-8AD8-4B61-AC41-64BDACB96F3D@kitware.com>

Hi all,

I've pushed some changes to a branch on my fork of CMB that get Dylan's excellent user's manual building on readthedocs.org. The manual appears at:

    http://cmb.readthedocs.org/    or
    http://cmb.rtfd.org/         (if you are feeling lazy).

The branch is at:

    gitlab.kitware.com/dcthomp/cmb/commits/read-the-docs

Because of gitlab and buildbot permissions, the version at readthedocs.org is only updated when I push changes to that branch of my fork. I have a request in to the sysadmin team asking how to integrate the required webhook. Once it's in place, the manual will be updated with each merge to master (and/or other branches, once we set release branches up).

If you are anxious to correct any of the documentation I fiddled with, please submit a MR against the read-the-docs branch in dcthomp/cmb.

	Thanks,
	David

From ben.boeckel at kitware.com  Mon Aug 17 09:43:31 2015
From: ben.boeckel at kitware.com (Ben Boeckel)
Date: Mon, 17 Aug 2015 09:43:31 -0400
Subject: [Cmb-users] Manual on readthedocs.org
In-Reply-To: <50031A99-8AD8-4B61-AC41-64BDACB96F3D@kitware.com>
References: <50031A99-8AD8-4B61-AC41-64BDACB96F3D@kitware.com>
Message-ID: <20150817134331.GA9516@megas.kitware.com>

On Sat, Aug 15, 2015 at 16:13:32 -0400, David Thompson wrote:
> Because of gitlab and buildbot permissions, the version at
> readthedocs.org is only updated when I push changes to that branch of
> my fork. I have a request in to the sysadmin team asking how to
> integrate the required webhook. Once it's in place, the manual will be
> updated with each merge to master (and/or other branches, once we set
> release branches up).

The owners (and masters?) of the project have permission to add web
hooks, so sysadmin isn't strictly necessary here. I replied in that
thread.

> If you are anxious to correct any of the documentation I fiddled with,
> please submit a MR against the read-the-docs branch in dcthomp/cmb.

You can only open MRs against the project you forked directly, so this
is likely not easily done.

--Ben