[cmake-developers] [CMake 0016105]: Address "RegularExpression::compile(): Expression too big."
Mantis Bug Tracker
mantis at public.kitware.com
Wed May 18 20:13:57 EDT 2016
The following issue has been SUBMITTED.
======================================================================
https://cmake.org/Bug/view.php?id=16105
======================================================================
Reported By: Roscoe A. Bartlett
Assigned To:
======================================================================
Project: CMake
Issue ID: 16105
Category: CMake
Reproducibility: always
Severity: major
Priority: normal
Status: new
======================================================================
Date Submitted: 2016-05-18 20:13 EDT
Last Modified: 2016-05-18 20:13 EDT
======================================================================
Summary: Address "RegularExpression::compile(): Expression
too big."
Description:
For large, complex CMake projects, we are getting the error
"RegularExpression::compile(): Expression too big.". This occurs when we can't
control the build directory path to make it short (i.e. $HOME/BUILD). The below
email chain describes a situation where they are basically stuck.
----
From: Bartlett, Roscoe A
Sent: Wednesday, May 18, 2016 7:52 PM
To: 'Johnson, Seth R.'
Cc: Evans, Thomas M.; Lefebvre, Robert A.
Subject: RE: [EXTERNAL] "RegularExpression::compile(): Expression too big."
Seth,
Yes, this is a CMake thing. For CASL VERA, as you have said, we have gotten
away with a very shallow directory. See:
https://tribits.org/doc/TribitsBuildReference.html#installing
But you can also avoid this by disabling RPATH or going with static libraries
(both are bad options obviously).
I have it in the Kitware backlog to resolve this somehow:
https://docs.google.com/document/d/1TLHRp8eTNKw7udOhwIxrOYShXQUbxAzsXeOq5cwWnKM/edit#bookmark=id.a9drhmfrc9i1
but there are several higher priority things to do first (at least for CASL
VERA).
There was a PR for TriBITS a while back that was supposed to help this in some
situations:
https://github.com/TriBITSPub/TriBITS/pull/79
but I don’t know if there is any more that can be done in TriBITS (do you see
any duplicate libraries?).
Looking at the CMake source code, it looks like they it hard-coded a 32 bit
integer range in a long (32767L) at:
https://github.com/Kitware/CMake/blob/master/Source/kwsys/RegularExpression.cxx#L372
You might see if that can be expanded to a 64 bit integer (which would remove
any limitation).
Cheers,
-Ross
P.S. How is Scale/Exnihilo connected to Spack? I someone creating a package
install script for Scale/Exnihilo for Spack?
From: Johnson, Seth R. [mailto:johnsonsr at ornl.gov]
Sent: Wednesday, May 18, 2016 4:00 PM
To: Bartlett, Roscoe A
Cc: Evans, Thomas M.; Lefebvre, Robert A.
Subject: [EXTERNAL] "RegularExpression::compile(): Expression too big."
Ross,
I'm hitting the dreaded
RegularExpression::compile(): Expression too big.
CMake Error at packages/ScalePrograms/cmake_install.cmake:45 (file):
file RPATH_CHANGE could not write new RPATH:
error when compiling the full Exnihilo+SCALE on the new CADES machine. I have
little control over the compile directory; I have no control over the wacky
Spack directories; and the number of libraries required to build SCALE is huge
because of the number of subpackages in Trilinos/Exnihilo/SCALE (49 Trilinos, 46
Exnihilo, 120 SCALE, 7 system/TPL).
Is there any solution aside from "try building with a shorter directory name and
hope that it's enough and hope that the number of packages doesn't grow"?
Thanks,
Seth
P.S.
The failing regex (with colons replaced by newlines) is:
/software/tools/spack/opt/spack/linux-x86_64/gcc-4.8.5/gcc-5.3.0-5hy3c4b3xqemygnfwyl5dsc753gbvzrc/lib
/software/tools/spack/opt/spack/linux-x86_64/gcc-4.8.5/gcc-5.3.0-5hy3c4b3xqemygnfwyl5dsc753gbvzrc/lib64
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/ScaleDriver
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Origen/origami
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Origen/arp
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Origen/couple
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Origen/origen
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Origen/SONInputLib
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/CsasShift
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/TKeno
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/PolarisWrapper
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/External
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/TNewt
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Tsunami3D
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Tsunami1D
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Csas56
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/Mavric
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/TXsdrn
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Sequence/DepletionUtils
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Module/Newt
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Module/TDepl1d
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/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Module/Keno56
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Newt
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/RP_Core
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/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/KenoDataComm
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/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/ScaleUtils/IO
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/ScaleSerialize
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Standard/BOFF
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Standard/Json
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/packages/Standard/Interface
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/Exnihilo/packages/Nemesis
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/Trilinos/packages/teuchos/numerics/src
/software/tools/spack/opt/spack/linux-x86_64/gcc-5.3.0/openblas-0.2.15-lu2vyeek6oujme33eke4je7ofvmg25je/lib
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/Trilinos/packages/teuchos/comm/src
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/Trilinos/packages/teuchos/parameterlist/src
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/Trilinos/packages/teuchos/core/src
/localscratch/compile/s3j-gcc5/Exnihilo-and-scale/Trilinos/packages/kokkos/core/src
/software/user_tools/current/cades-nsed-exnihilo/gcc5/silo-parallel/lib
/software/tools/apps/hdf5/gcc5/1.8.16/lib
/opt/torque/lib
/software/tools/spack/opt/spack/linux-x86_64/gcc-5.3.0/openmpi-1.10.2-fy4q27saq4bmqggguphx2m64rf4gr663/lib
Steps to Reproduce:
Use a long build directory path and then configure CASL VERA to install and type
`make -j16 install`. If you make the build directory path at all long, you will
see this.
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Issue History
Date Modified Username Field Change
======================================================================
2016-05-18 20:13 Roscoe A. BartlettNew Issue
======================================================================
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