| 1 |
|
/*========================================================================= |
| 2 |
|
|
| 3 |
|
Program: Insight Segmentation & Registration Toolkit |
| 4 |
|
Module: $RCSfile: itkBloxCoreAtomImage.h.html,v $ |
| 5 |
|
Language: C++ |
| 6 |
|
Date: $Date: 2006/01/17 19:15:33 $ |
| 7 |
|
Version: $Revision: 1.4 $ |
| 8 |
|
|
| 9 |
|
Copyright (c) Insight Software Consortium. All rights reserved. |
| 10 |
|
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details. |
| 11 |
|
|
| 12 |
|
This software is distributed WITHOUT ANY WARRANTY; without even |
| 13 |
|
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR |
| 14 |
|
PURPOSE. See the above copyright notices for more information. |
| 15 |
|
|
| 16 |
|
=========================================================================*/ |
| 17 |
|
#ifndef __itkBloxCoreAtomImage_h |
| 18 |
|
#define __itkBloxCoreAtomImage_h |
| 19 |
|
|
| 20 |
|
#include "vnl/vnl_vector_fixed.h" |
| 21 |
|
#include "vnl/vnl_vector.h" |
| 22 |
|
#include "itkPoint.h" |
| 23 |
|
#include "itkVector.h" |
| 24 |
|
#include "itkCovariantVector.h" |
| 25 |
|
#include "itkBloxBoundaryPointItem.h" |
| 26 |
|
#include "itkBloxBoundaryPointPixel.h" |
| 27 |
|
#include "itkBloxBoundaryPointImage.h" |
| 28 |
|
#include "itkBloxCoreAtomItem.h" |
| 29 |
|
#include "itkBloxCoreAtomPixel.h" |
| 30 |
|
#include "itkBloxImage.h" |
| 31 |
|
|
| 32 |
|
namespace itk |
| 33 |
|
{ |
| 34 |
|
|
| 35 |
|
/** \class BloxCoreAtomImage |
| 36 |
|
* \brief N-dimensional image class which handles BloxCoreAtomItems |
| 37 |
|
* |
| 38 |
|
* A BloxCoreAtomImage stores and processes BloxCoreAtomItem's (in BloxPixel |
| 39 |
|
* linked lists). The primary task of BloxCoreAtomImage is finding core atoms |
| 40 |
|
* and storing them in the correct blox location. |
| 41 |
|
* \ingroup ImageObjects |
| 42 |
|
*/ |
| 43 |
|
template <unsigned int dim> |
| 44 |
|
class ITK_EXPORT BloxCoreAtomImage : |
| 45 |
IND |
**public BloxImage<BloxCoreAtomPixel<dim>, dim> |
| 46 |
|
{ |
| 47 |
|
public: |
| 48 |
|
/** Standard class typedefs. */ |
| 49 |
|
typedef BloxCoreAtomImage Self; |
| 50 |
|
|
| 51 |
|
/** Dimension of the image. This constant is used by functions that are |
| 52 |
|
* templated over image type (as opposed to being templated over pixel |
| 53 |
|
* type and dimension) when they need compile time access to the dimension |
| 54 |
|
* of the image. */ |
| 55 |
|
itkStaticConstMacro(NDimensions, unsigned int, dim); |
| 56 |
|
|
| 57 |
|
typedef BloxImage<BloxCoreAtomPixel<dim>, dim> Superclass; |
| 58 |
TDA |
typedef SmartPointer<Self> Pointer; |
| 59 |
TDA |
typedef SmartPointer<const Self> ConstPointer; |
| 60 |
TDA |
typedef WeakPointer<const Self> ConstWeakPointer; |
| 61 |
|
|
| 62 |
|
/** Method for creation through the object factory. */ |
| 63 |
|
itkNewMacro(Self); |
| 64 |
|
|
| 65 |
|
/** Run-time type information (and related methods). */ |
| 66 |
|
itkTypeMacro(BloxCoreAtomImage, BloxImage); |
| 67 |
|
|
| 68 |
|
/** The type of boundary point item we process * */ |
| 69 |
|
typedef BloxBoundaryPointItem<dim> BPItemType; |
| 70 |
|
|
| 71 |
|
/** Pixel typedef support. Used to declare pixel type in filters |
| 72 |
|
* or other operations. */ |
| 73 |
|
typedef BloxCoreAtomPixel<dim > PixelType; |
| 74 |
|
|
| 75 |
|
/** Internal Pixel representation. Used to maintain a uniform API |
| 76 |
|
* with Image Adaptors and allow to keep a particular internal |
| 77 |
|
* representation of data while showing a different external |
| 78 |
|
* representation. */ |
| 79 |
|
typedef PixelType InternalPixelType; |
| 80 |
|
|
| 81 |
|
/** Accessor type that convert data between internal and external |
| 82 |
|
* representations. */ |
| 83 |
|
typedef DefaultPixelAccessor< PixelType > AccessorType; |
| 84 |
|
|
| 85 |
|
/** The type of Point used to convert between physical and blox space */ |
| 86 |
|
typedef Point<double, dim> PositionType; |
| 87 |
|
|
| 88 |
|
/** The vector between two points */ |
| 89 |
|
typedef typename PositionType::VectorType VectorType; |
| 90 |
|
|
| 91 |
|
/** How we represent gradients. */ |
| 92 |
|
typedef CovariantVector<double, dim> GradientType; |
| 93 |
|
|
| 94 |
|
/** get macro for m_MedialNodeCount. */ |
| 95 |
|
itkGetMacro(MedialNodeCount, int); |
| 96 |
|
|
| 97 |
|
typedef std::vector<PixelType*> NodePointerListType; |
| 98 |
TDA |
typedef std::vector<PixelType*> * NodePointerListPointer; |
| 99 |
|
|
| 100 |
|
/** get macro for m_NodePointerList. */ |
| 101 |
|
itkGetMacro(NodePointerList, NodePointerListPointer); |
| 102 |
|
|
| 103 |
|
/** Convenient typedefs obtained from Superclass. |
| 104 |
|
* Note: Unlike "normal" images BloxCoreAtomImages support neither Scalar nor |
| 105 |
|
* Vector calls!!! Scalar and vector traits are not defined and do not |
| 106 |
|
* make sense for linked lists (at the present time). */ |
| 107 |
|
typedef typename Superclass::PixelContainer PixelContainer; |
| 108 |
TDA |
typedef typename Superclass::SizeType SizeType; |
| 109 |
TDA |
typedef typename Superclass::IndexType IndexType; |
| 110 |
TDA |
typedef typename IndexType::IndexValueType IndexValueType; |
| 111 |
TDA |
typedef typename Superclass::OffsetType OffsetType; |
| 112 |
TDA |
typedef typename Superclass::RegionType RegionType; |
| 113 |
|
|
| 114 |
|
/** A pointer to the pixel container. */ |
| 115 |
|
typedef typename PixelContainer::Pointer PixelContainerPointer; |
| 116 |
|
|
| 117 |
|
/** Do eigenanalysis on all pixels in the image. */ |
| 118 |
|
void DoEigenanalysis(); |
| 119 |
|
|
| 120 |
|
/** Core atom voting routine. */ |
| 121 |
|
void DoCoreAtomVoting(); |
| 122 |
|
|
| 123 |
|
|
| 124 |
IND |
*// ImageRegionIterator<Self> ReturnIterator(); |
| 125 |
|
|
| 126 |
|
|
| 127 |
|
protected: |
| 128 |
|
BloxCoreAtomImage(); |
| 129 |
|
virtual ~BloxCoreAtomImage(); |
| 130 |
|
void PrintSelf(std::ostream& os, Indent indent) const; |
| 131 |
|
|
| 132 |
|
private: |
| 133 |
|
BloxCoreAtomImage(const Self&); //purposely not implemented |
| 134 |
|
void operator=(const Self&); //purposely not implemented |
| 135 |
|
|
| 136 |
|
/** The number of medial nodes found. */ |
| 137 |
|
int m_MedialNodeCount; |
| 138 |
|
|
| 139 |
|
/** List of pointers to all the medial nodes. */ |
| 140 |
|
NodePointerListPointer m_NodePointerList; |
| 141 |
|
|
| 142 |
|
}; |
| 143 |
|
|
| 144 |
|
} // end namespace itk |
| 145 |
|
|
| 146 |
|
#ifndef ITK_MANUAL_INSTANTIATION |
| 147 |
|
#include "itkBloxCoreAtomImage.txx" |
| 148 |
|
#endif |
| 149 |
|
|
| 150 |
|
#endif |
| 151 |
|
|
